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NC_054725.1__YP_010059408.1__KHQ85_gp158__00158

Bact-Vir

Identity

Accession:: NC_054725 ↗
Kingdom:: phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skogvirus› Gordonia_phage_Skog

TaxID: 2704033

Cluster

View cluster (116 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-103

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23968.2 best	Phage_cement_3	99.4	2.90e-28	100.0%	45.5%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6ethA04	2.40.340.10	Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV	0.58	48.0	4.79e-01	89.7%	89.9%
4g1vA02	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.53	38.0	3.49e-01	96.6%	55.9%
3oymA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.51	32.0	3.45e-01	79.3%	77.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5025019	70.1.1.1 ↗	beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C	0.60	52.0	5.27e-01	98.9%	96.4%
3686775	70.1.1.1 ↗	beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C	0.60	50.0	5.09e-01	90.8%	95.3%
4331397	1.1.8.7 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel	0.59	40.0	4.17e-01	93.1%	76.2%
2389830	70.1.1.1 ↗	beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C	0.58	49.0	4.91e-01	92.0%	90.1%
3954857	1.1.8.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain	0.56	45.0	4.38e-01	100.0%	78.6%
3482423	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.52	30.0	3.07e-01	95.4%	55.3%

D2 high residues 108-165

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23968.2 best	Phage_cement_3	38.8	1.20e-09	100.0%	34.7%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mbmA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.67	44.0	4.13e-01	98.3%	55.6%
2qa1A02	3.30.70.2450	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.56	35.0	3.28e-01	100.0%	46.8%
1v0fB03	2.40.30.20	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.56	41.0	3.73e-01	100.0%	56.5%
1g2bA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.51	44.0	4.38e-01	100.0%	93.5%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3981037	70.4.1.9 ↗	beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2	0.71	59.0	6.05e-01	100.0%	98.2%
5002645	70.4.1.0 ↗	beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D)	0.71	63.0	6.30e-01	100.0%	96.6%
3969204	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.68	48.0	4.48e-01	100.0%	58.7%
5083816	70.4.1.0 ↗	beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D)	0.63	53.0	5.06e-01	100.0%	92.9%
4998285	882.1.1.4 ↗	a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding	0.58	44.0	3.46e-01	89.7%	94.7%
3642328	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.58	50.0	5.10e-01	98.3%	100.0%
4849089	2485.3.1.8 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein	0.58	49.0	3.93e-01	100.0%	47.0%
4116921	4.1.1.297 ↗	beta barrels › SH3 › SH3 › SH3 › YajC	0.58	35.0	3.56e-01	81.0%	58.3%
3594588	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.56	49.0	4.22e-01	100.0%	63.2%
5045742	882.1.1.4 ↗	a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding	0.52	39.0	3.10e-01	91.4%	55.3%