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NC_054725.1__YP_010059419.1__KHQ85_gp169__00169

Bact-Vir

NC_054725.1__YP_010059419.1__KHQ85_gp169__00169

Identity

Accession:
NC_054725 ↗
Kingdom:
phage

Quality

49.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skogvirus› Gordonia_phage_Skog

TaxID: 2704033

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 118-171
PDB
Domain cluster: rep: OL436246.1__UGL60846.1__X__00192__D177-231
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.85 67.0 5.43e-01 100.0% 47.4%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.81 58.0 6.12e-01 100.0% 85.4%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.80 57.0 5.88e-01 100.0% 80.4%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.79 60.0 6.40e-01 98.1% 97.8%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.77 56.0 5.09e-01 100.0% 57.5%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 47.0 4.28e-01 83.3% 97.2%
3ne5B03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 50.0 4.65e-01 92.6% 77.1%
4ydsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 35.0 2.26e-01 83.3% 15.0%
4oj5A02 2.10.10.80 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.56 46.0 4.36e-01 100.0% 77.5%
2g5dA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.55 44.0 2.98e-01 87.0% 95.5%
5tw4A02 2.30.140.20 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain 0.55 43.0 4.11e-01 92.6% 95.7%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.65e-01 74.1% 73.3%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 48.0 4.01e-01 100.0% 74.7%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.49e-01 74.1% 74.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1322863 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.86 66.0 7.08e-01 98.1% 95.7%
1322862 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 66.0 7.04e-01 100.0% 93.8%
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 65.0 6.36e-01 100.0% 76.3%
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.83 59.0 6.13e-01 100.0% 80.0%
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.83 65.0 6.39e-01 100.0% 77.6%
4444075 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.78 56.0 6.14e-01 100.0% 95.3%
1694867 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.78 63.0 6.38e-01 100.0% 88.7%
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 58.0 6.04e-01 100.0% 88.0%
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.76 57.0 5.93e-01 100.0% 88.0%
4307941 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.68 62.0 6.04e-01 100.0% 93.2%
4009008 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.68 57.0 5.69e-01 98.1% 90.9%
4149799 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.68 53.0 5.54e-01 98.1% 94.0%
3791484 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.58 36.0 2.60e-01 94.4% 19.6%
2761575 51.1.1.2 ↗ beta sandwiches › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › DUF1958 0.56 43.0 4.11e-01 90.7% 95.7%
2896442 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.51 44.0 3.72e-01 100.0% 68.8%