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NC_054725.1__YP_010059442.1__KHQ85_gp192__00192
Bact-VirNC_054725.1__YP_010059442.1__KHQ85_gp192__00192
Identity
- Accession:
- NC_054725 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-63
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7wd3A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.76 | 47.0 | 4.12e-01 | 72.9% | 45.1% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 54.0 | 4.20e-01 | 83.1% | 76.4% |
| 1g2nA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.68 | 52.0 | 3.40e-01 | 89.8% | 19.5% |
| 4griA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.66 | 43.0 | 4.54e-01 | 71.2% | 75.5% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 55.0 | 5.02e-01 | 93.2% | 86.8% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.62 | 43.0 | 4.05e-01 | 88.1% | 59.5% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.61 | 39.0 | 3.39e-01 | 88.1% | 42.7% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.61 | 38.0 | 3.29e-01 | 76.3% | 40.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973303 | 1049.2.1.3 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › PF26776 | 0.88 | 81.0 | 6.39e-01 | 100.0% | 88.7% |
| 5002735 | 1049.2.1.0 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain | 0.81 | 74.0 | 6.21e-01 | 100.0% | 77.9% |
| 3734418 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.64 | 56.0 | 3.46e-01 | 94.9% | 17.9% |
| 3945351 | 605.1.1.128 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF485 | 0.63 | 54.0 | 4.82e-01 | 96.6% | 76.5% |
| 3591935 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.61 | 50.0 | 4.48e-01 | 96.6% | 63.3% |
D2
high
residues 82-171
Domain cluster:
rep: NC_049498.1__YP_009887297.1__HYQ28_gp31__00031__D90-184
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04865.20 best | Baseplate_J | 38.0 | 2.60e-09 | 94.4% | 73.8% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.72 | 55.0 | 5.52e-01 | 100.0% | 80.2% |
| 6oauA02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.62 | 52.0 | 4.77e-01 | 100.0% | 69.7% |
| 2bhgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 47.0 | 4.56e-01 | 91.1% | 72.5% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.62 | 45.0 | 4.62e-01 | 91.1% | 83.1% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 52.0 | 5.15e-01 | 100.0% | 90.4% |
| 2derA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 48.0 | 4.87e-01 | 100.0% | 88.5% |
| 3v98B01 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.59 | 48.0 | 4.51e-01 | 97.8% | 70.9% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 52.0 | 4.93e-01 | 100.0% | 94.5% |
| 3wndA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 51.0 | 5.10e-01 | 100.0% | 95.7% |
| 1e62A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 46.0 | 4.15e-01 | 91.1% | 75.8% |
| 1vwxf00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.57 | 46.0 | 4.35e-01 | 90.0% | 76.1% |
| 5dmyA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 48.0 | 4.43e-01 | 100.0% | 76.0% |
| 2b1xA01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.55 | 46.0 | 3.23e-01 | 95.6% | 59.4% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 38.0 | 3.09e-01 | 73.3% | 57.3% |
| 7vc6A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 47.0 | 4.16e-01 | 100.0% | 68.8% |
| 6ovbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 41.0 | 3.54e-01 | 100.0% | 48.7% |
| 3nqkA01 | 2.60.40.1740 | Mainly Beta › Sandwich › Immunoglobulin-like › hypothetical protein (bacova_03559) | 0.54 | 46.0 | 4.04e-01 | 100.0% | 76.6% |
| 5v00B01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 31.0 | 3.26e-01 | 98.9% | 59.8% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 36.0 | 3.41e-01 | 71.1% | 91.5% |
| 2gvhC01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 38.0 | 3.41e-01 | 76.7% | 91.2% |
| 4xjcF00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.53 | 46.0 | 3.81e-01 | 100.0% | 55.6% |
| 1bywA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 37.0 | 3.52e-01 | 74.4% | 100.0% |
| 4ohvA01 | 2.60.120.1030 | Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain | 0.52 | 37.0 | 3.88e-01 | 100.0% | 85.0% |
| 3cewA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 32.0 | 3.00e-01 | 100.0% | 49.1% |
| 2dtgE06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.81e-01 | 100.0% | 72.8% |
| 3u0aA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.50 | 35.0 | 2.58e-01 | 71.1% | 82.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3977754 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.87 | 79.0 | 7.81e-01 | 100.0% | 90.5% |
| 4514735 | 1049.2.1.4 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J | 0.86 | 73.0 | 5.53e-01 | 100.0% | 42.1% |
| 4957576 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.83 | 76.0 | 7.52e-01 | 98.9% | 91.6% |
| 1562394 | 1.1.8.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GlxA | 0.75 | 69.0 | 6.48e-01 | 100.0% | 94.4% |
| 3195396 | 11.1.1.911 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28381 | 0.64 | 58.0 | 4.92e-01 | 100.0% | 66.2% |
| 3735482 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 56.0 | 4.87e-01 | 100.0% | 77.1% |
| 5054836 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 52.0 | 4.81e-01 | 92.2% | 84.3% |
| 3894765 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.63 | 55.0 | 4.94e-01 | 100.0% | 70.8% |
| 3203720 | 11.1.1.911 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28381 | 0.61 | 54.0 | 4.69e-01 | 100.0% | 78.6% |
| 3813325 | 11.1.1.911 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28381 | 0.61 | 54.0 | 4.49e-01 | 100.0% | 65.6% |
| 3991328 | 11.1.1.414 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM106 | 0.60 | 52.0 | 4.32e-01 | 100.0% | 65.3% |
| 4890601 | 1.1.7.93 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D3, GTP_EFTU_D2 | 0.60 | 44.0 | 4.34e-01 | 87.8% | 71.7% |
| 3513785 | 11.1.1.414 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM106 | 0.60 | 52.0 | 4.38e-01 | 100.0% | 69.4% |
| 3504502 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.60 | 51.0 | 4.77e-01 | 100.0% | 76.3% |
| 5066091 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 52.0 | 4.59e-01 | 100.0% | 77.8% |
| 4968129 | 11.1.1.1424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 | 0.59 | 48.0 | 4.59e-01 | 100.0% | 78.1% |
| 5041091 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 49.0 | 4.62e-01 | 100.0% | 79.1% |
| 3202394 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 49.0 | 4.21e-01 | 100.0% | 85.3% |
| 3584141 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 48.0 | 3.93e-01 | 100.0% | 56.7% |
| 3429784 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.56 | 48.0 | 4.08e-01 | 100.0% | 83.1% |
| 4340352 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 44.0 | 4.13e-01 | 100.0% | 68.7% |
| 2472915 | 223.1.1.51 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 | 0.55 | 39.0 | 2.80e-01 | 73.3% | 42.4% |
| 1723245 | 10.42.1.2 ↗ | beta sandwiches › jelly-roll › ssRNA positive-strand viruses coat protein P (projecting) domain › ssRNA positive-strand viruses coat protein P (projecting) domain › Coat_P | 0.55 | 38.0 | 3.57e-01 | 100.0% | 56.4% |
| 1279841 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.55 | 31.0 | 3.45e-01 | 98.9% | 70.0% |
| 3729773 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 47.0 | 4.10e-01 | 100.0% | 85.5% |
| 3593406 | 10.34.1.0 ↗ | beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain | 0.53 | 38.0 | 4.03e-01 | 98.9% | 89.3% |
| 5041635 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 4.12e-01 | 100.0% | 82.4% |
| 2822348 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.52 | 31.0 | 3.27e-01 | 94.4% | 64.3% |
| 1296378 | 10.34.1.1 ↗ | beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N | 0.52 | 37.0 | 3.86e-01 | 100.0% | 85.0% |
| 3423906 | 4.25.1.1 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp | 0.51 | 38.0 | 4.16e-01 | 80.0% | 100.0% |
| 4958572 | 75.1.1.0 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like | 0.51 | 35.0 | 3.16e-01 | 72.2% | 95.6% |
| 4936167 | 75.1.1.0 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like | 0.51 | 35.0 | 3.13e-01 | 71.1% | 97.7% |
| 4887541 | 10.32.1.18 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C | 0.50 | 40.0 | 3.55e-01 | 86.7% | 67.9% |
| 5060540 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 42.0 | 3.72e-01 | 100.0% | 76.7% |
| 5045669 | 10.20.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease | 0.50 | 42.0 | 3.88e-01 | 95.6% | 93.3% |
D3
high
residues 226-323
Domain cluster:
rep: KT724718.1__ALJ98222.1__BiPBO1_08__00008__D59-138
CATH (56)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 47.0 | 2.96e-01 | 90.8% | 14.1% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.65 | 50.0 | 5.16e-01 | 82.7% | 97.8% |
| 4pqqA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 54.0 | 4.63e-01 | 93.9% | 97.4% |
| 2cwrA00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 42.0 | 4.22e-01 | 85.7% | 70.1% |
| 4igbB02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 56.0 | 4.91e-01 | 100.0% | 86.7% |
| 1vf7F01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.61 | 46.0 | 4.62e-01 | 81.6% | 100.0% |
| 6lebA02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 55.0 | 4.88e-01 | 100.0% | 75.5% |
| 2y7lA02 | 2.60.40.2430 | Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain | 0.60 | 48.0 | 4.19e-01 | 86.7% | 58.9% |
| 6cl5A01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 46.0 | 4.60e-01 | 82.7% | 82.4% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.60 | 53.0 | 5.24e-01 | 99.0% | 95.2% |
| 1cwpA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.60 | 48.0 | 4.19e-01 | 87.8% | 87.2% |
| 2ccvA00 | 2.60.40.2080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 46.0 | 4.61e-01 | 82.7% | 100.0% |
| 4mboA02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 53.0 | 4.57e-01 | 100.0% | 82.2% |
| 3q39B02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.59 | 45.0 | 4.33e-01 | 80.6% | 98.2% |
| 4psrA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 45.0 | 4.28e-01 | 83.7% | 68.9% |
| 1h6eA02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.59 | 43.0 | 4.26e-01 | 88.8% | 72.4% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.58 | 43.0 | 4.68e-01 | 79.6% | 97.5% |
| 4xotA03 | 2.40.30.250 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.58 | 44.0 | 4.65e-01 | 90.8% | 93.0% |
| 5y4mA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 48.0 | 4.18e-01 | 89.8% | 98.0% |
| 1stmA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.58 | 47.0 | 4.21e-01 | 88.8% | 91.5% |
| 5jzgA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 46.0 | 3.53e-01 | 85.7% | 73.0% |
| 4ei0A01 | 2.60.40.3550 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 | 0.58 | 51.0 | 4.58e-01 | 100.0% | 83.7% |
| 4mbrA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 51.0 | 4.47e-01 | 100.0% | 75.3% |
| 3gwqA01 | 2.40.37.20 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain | 0.57 | 50.0 | 4.19e-01 | 100.0% | 65.5% |
| 2vvfA02 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 45.0 | 4.13e-01 | 85.7% | 75.0% |
| 4p0dA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 50.0 | 4.22e-01 | 100.0% | 85.3% |
| 1g43A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.56 | 50.0 | 4.28e-01 | 100.0% | 66.3% |
| 3lsoA03 | 2.60.40.2260 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 46.0 | 3.95e-01 | 88.8% | 63.3% |
| 2cdoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 42.0 | 3.82e-01 | 80.6% | 99.3% |
| 5eanA01 | 2.40.30.270 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 42.0 | 4.10e-01 | 80.6% | 83.3% |
| 4b60A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 50.0 | 4.45e-01 | 100.0% | 78.3% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 44.0 | 3.97e-01 | 86.7% | 79.4% |
| 3au0A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 50.0 | 4.36e-01 | 100.0% | 81.2% |
| 4ag4A02 | 2.60.120.1190 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 3.65e-01 | 86.7% | 50.8% |
| 3kg5A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 44.0 | 4.43e-01 | 100.0% | 84.5% |
| 1pgsA01 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 43.0 | 3.96e-01 | 85.7% | 78.5% |
| 1n67A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 49.0 | 4.37e-01 | 100.0% | 80.9% |
| 6ec6A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 45.0 | 3.76e-01 | 100.0% | 49.5% |
| 1vmfC00 | 2.60.120.460 | Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like | 0.55 | 45.0 | 4.03e-01 | 88.8% | 99.3% |
| 1n08A00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.55 | 46.0 | 3.95e-01 | 91.8% | 66.2% |
| 3thdC02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 40.0 | 3.25e-01 | 85.7% | 40.4% |
| 2j8hA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 4.36e-01 | 99.0% | 87.8% |
| 4kq7A01 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.54 | 45.0 | 3.90e-01 | 94.9% | 87.7% |
| 7y6oA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 41.0 | 4.17e-01 | 83.7% | 85.6% |
| 3op1A02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.53 | 43.0 | 4.14e-01 | 90.8% | 77.5% |
| 2w5fB01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 41.0 | 3.63e-01 | 84.7% | 63.2% |
| 3fcsA03 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.53 | 48.0 | 4.28e-01 | 100.0% | 82.7% |
| 2lp6A00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.53 | 44.0 | 4.58e-01 | 93.9% | 100.0% |
| 1df0A03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 45.0 | 4.13e-01 | 95.9% | 97.0% |
| 1hn0A04 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.52 | 37.0 | 3.46e-01 | 81.6% | 59.0% |
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 41.0 | 4.38e-01 | 86.7% | 98.9% |
| 4i0wD02 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 46.0 | 4.21e-01 | 100.0% | 76.9% |
| 3bnwB00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.51 | 45.0 | 3.93e-01 | 100.0% | 96.8% |
| 2e26A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 39.0 | 3.46e-01 | 84.7% | 66.5% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.97e-01 | 81.6% | 97.7% |
| 3kq4B04 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.50 | 36.0 | 3.54e-01 | 92.9% | 67.6% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3386975 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 50.0 | 4.81e-01 | 81.6% | 97.4% |
| 4936096 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.66 | 40.0 | 4.15e-01 | 81.6% | 65.6% |
| 4616814 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.65 | 50.0 | 5.04e-01 | 81.6% | 99.0% |
| 3416094 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.65 | 52.0 | 4.04e-01 | 86.7% | 39.1% |
| 4996749 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.65 | 53.0 | 3.85e-01 | 88.8% | 36.7% |
| 3227251 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 49.0 | 4.64e-01 | 80.6% | 85.2% |
| 3485746 | 12.2.1.8 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › UPF0556 | 0.64 | 48.0 | 4.41e-01 | 84.7% | 60.8% |
| 3604637 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.63 | 50.0 | 4.72e-01 | 88.8% | 71.3% |
| 4433312 | 11.1.5.38 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › SdrG_C_C | 0.62 | 56.0 | 4.73e-01 | 100.0% | 80.0% |
| 3569095 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.62 | 46.0 | 4.27e-01 | 100.0% | 61.6% |
| 3869023 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.62 | 50.0 | 3.92e-01 | 87.8% | 43.3% |
| 3969203 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.61 | 48.0 | 4.62e-01 | 86.7% | 73.0% |
| 3860841 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.61 | 49.0 | 3.74e-01 | 87.8% | 50.4% |
| 5030085 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.61 | 55.0 | 4.62e-01 | 100.0% | 80.0% |
| 3270934 | 4182.1.1.2 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin | 0.60 | 47.0 | 4.61e-01 | 82.7% | 97.1% |
| 5056929 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 46.0 | 4.09e-01 | 100.0% | 56.6% |
| 3616420 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 49.0 | 3.96e-01 | 89.8% | 61.6% |
| 5043829 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.59 | 47.0 | 4.06e-01 | 100.0% | 54.2% |
| 4954927 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.59 | 45.0 | 3.89e-01 | 87.8% | 51.6% |
| 3969813 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.59 | 51.0 | 5.06e-01 | 95.9% | 96.2% |
| 3539999 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.57 | 44.0 | 3.65e-01 | 80.6% | 76.5% |
| 3988580 | 1.1.7.95 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 | 0.57 | 50.0 | 4.86e-01 | 96.9% | 98.2% |
| 3913587 | 10.32.1.233 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin | 0.57 | 42.0 | 4.25e-01 | 84.7% | 78.0% |
| 4944779 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.57 | 51.0 | 4.08e-01 | 100.0% | 89.7% |
| 4154798 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.57 | 50.0 | 4.89e-01 | 99.0% | 97.3% |
| 4027766 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 40.0 | 4.06e-01 | 85.7% | 74.0% |
| 3889987 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 43.0 | 3.67e-01 | 82.7% | 65.5% |
| 4471982 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.56 | 50.0 | 3.84e-01 | 100.0% | 59.1% |
| 4546062 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.56 | 50.0 | 3.85e-01 | 100.0% | 60.4% |
| 3994570 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 47.0 | 4.19e-01 | 96.9% | 64.8% |
| 3409985 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.55 | 49.0 | 3.78e-01 | 100.0% | 47.1% |
| 3389051 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.55 | 46.0 | 4.03e-01 | 91.8% | 68.0% |
| 3936582 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.55 | 49.0 | 3.81e-01 | 100.0% | 63.6% |
| 5023489 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 43.0 | 4.17e-01 | 85.7% | 92.7% |
| 3731098 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 47.0 | 3.96e-01 | 100.0% | 66.1% |
| 3431400 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 47.0 | 4.16e-01 | 99.0% | 81.3% |
| 3250384 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.54 | 41.0 | 3.41e-01 | 80.6% | 48.9% |
| 5007278 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.54 | 42.0 | 3.89e-01 | 85.7% | 66.9% |
| 3309020 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 42.0 | 3.98e-01 | 86.7% | 73.6% |
| 3783233 | 4081.1.1.7 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I | 0.53 | 47.0 | 3.82e-01 | 100.0% | 51.3% |
| 3602447 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.53 | 47.0 | 3.95e-01 | 99.0% | 61.2% |
| 3830329 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 40.0 | 3.13e-01 | 82.7% | 41.7% |
| 5043435 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.53 | 43.0 | 3.63e-01 | 100.0% | 51.4% |
| 5028923 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.52 | 46.0 | 3.61e-01 | 100.0% | 72.7% |
| 3717740 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 41.0 | 3.51e-01 | 87.8% | 72.4% |
| 5039473 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 46.0 | 4.36e-01 | 100.0% | 96.6% |
| 3496890 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.51 | 45.0 | 2.96e-01 | 100.0% | 74.8% |
| 3257261 | 4081.1.1.7 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I | 0.51 | 45.0 | 3.68e-01 | 100.0% | 54.6% |
| 5053832 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.50 | 44.0 | 3.59e-01 | 100.0% | 49.7% |
| 3491151 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 44.0 | 3.90e-01 | 100.0% | 86.0% |
D4
high
residues 326-441
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lxmA04 | 2.60.40.1380 | Mainly Beta › Sandwich › Immunoglobulin-like › E set domains; domain 4 | 0.61 | 30.0 | 3.59e-01 | 92.2% | 68.4% |
| 3op1A02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.56 | 38.0 | 3.95e-01 | 92.2% | 73.9% |
| 1xe1A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 35.0 | 3.83e-01 | 91.4% | 89.0% |
| 1n08A00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.51 | 41.0 | 3.77e-01 | 95.7% | 65.6% |
| 1g43A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.51 | 43.0 | 3.94e-01 | 98.3% | 69.4% |
| 4i0wD02 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 4.06e-01 | 96.6% | 80.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3918381 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.60 | 42.0 | 4.35e-01 | 96.6% | 79.0% |
| 4951521 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 29.0 | 3.52e-01 | 84.5% | 81.4% |
| 4117582 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.54 | 39.0 | 3.84e-01 | 91.4% | 69.6% |
| 3614575 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 47.0 | 4.38e-01 | 97.4% | 91.7% |
| 1397 | 11.1.1.319 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HL_N-beta | 0.53 | 27.0 | 3.16e-01 | 91.4% | 66.7% |
| 3270934 | 4182.1.1.2 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin | 0.52 | 43.0 | 4.47e-01 | 99.1% | 99.0% |
| 4981128 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 4.27e-01 | 91.4% | 94.3% |
| 3860841 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.51 | 44.0 | 3.54e-01 | 98.3% | 48.7% |
D5
high
residues 466-576
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26079.1 best | Baseplate_J_C | 27.4 | 4.20e-06 | 73.0% | 89.2% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wiyA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 46.0 | 3.12e-01 | 77.5% | 76.4% |
| 4s2rQ03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.61 | 49.0 | 3.56e-01 | 85.6% | 58.2% |
| 5tl8A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.60 | 46.0 | 3.08e-01 | 81.1% | 77.6% |
| 3f8mA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 34.0 | 4.20e-01 | 73.9% | 100.0% |
| 3e6qA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.57 | 41.0 | 3.96e-01 | 74.8% | 96.0% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.55 | 38.0 | 4.23e-01 | 72.1% | 95.5% |
| 2pjpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 29.0 | 3.61e-01 | 86.5% | 100.0% |
| 1tltA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 33.0 | 2.86e-01 | 89.2% | 38.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4453960 | 3228.1.1.2 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C | 0.91 | 64.0 | 7.57e-01 | 97.3% | 100.0% |
| 4957578 | 3228.1.1.2 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C | 0.91 | 72.0 | 7.96e-01 | 100.0% | 100.0% |
| 4093853 | 3228.1.1.2 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C | 0.90 | 65.0 | 7.53e-01 | 99.1% | 100.0% |
| 4565831 | 3228.1.1.2 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C | 0.88 | 69.0 | 7.59e-01 | 99.1% | 100.0% |
| 3977755 | 3228.1.1.2 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C | 0.81 | 60.0 | 6.78e-01 | 99.1% | 100.0% |
| 3943567 | 3228.1.1.0 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III | 0.79 | 68.0 | 7.17e-01 | 98.2% | 100.0% |
| 5002740 | 3228.1.1.0 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III | 0.79 | 73.0 | 7.38e-01 | 100.0% | 98.2% |
| 1870475 | 3228.1.1.2 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C | 0.78 | 60.0 | 6.54e-01 | 100.0% | 96.7% |
| 5004557 | 3228.1.1.0 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III | 0.77 | 72.0 | 7.30e-01 | 99.1% | 100.0% |
| 3395489 | 229.1.1.7 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N | 0.68 | 49.0 | 5.41e-01 | 99.1% | 93.3% |
| 3313414 | 229.1.1.7 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N | 0.64 | 48.0 | 5.25e-01 | 98.2% | 96.7% |
| 3175966 | 283.1.1.3 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase | 0.62 | 45.0 | 4.49e-01 | 86.5% | 72.3% |
| 3927643 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.61 | 44.0 | 4.87e-01 | 97.3% | 97.6% |
| 3580586 | 229.1.1.4 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › Pch2_N | 0.61 | 45.0 | 4.86e-01 | 98.2% | 94.4% |
| 3209734 | 229.1.1.7 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N | 0.61 | 46.0 | 4.94e-01 | 100.0% | 95.8% |
| 3675443 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 41.0 | 4.35e-01 | 82.9% | 81.1% |
| 5073964 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.58 | 43.0 | 4.67e-01 | 98.2% | 97.8% |
| 5035624 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.58 | 41.0 | 4.57e-01 | 80.2% | 95.3% |
| 3965915 | 315.1.1.3 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › CHMI | 0.57 | 40.0 | 3.90e-01 | 73.0% | 95.1% |
| 3740395 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.55 | 46.0 | 4.79e-01 | 99.1% | 96.2% |
| 3279157 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.51 | 42.0 | 4.04e-01 | 88.3% | 95.2% |
| 3168448 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.50 | 39.0 | 3.77e-01 | 83.8% | 76.0% |