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NC_054725.1__YP_010059453.1__KHQ85_gp203__00203
Bact-VirNC_054725.1__YP_010059453.1__KHQ85_gp203__00203
Identity
- Accession:
- NC_054725 ↗
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 69-147
Domain cluster:
rep: NC_054726.1__YP_010059541.1__KHQ86_gp065__00065__D16-94
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23875.2 best | DUF7229 | 112.8 | 9.20e-33 | 94.9% | 84.4% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zttA00 | 6.10.140.720 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 50.0 | 5.24e-01 | 100.0% | 82.2% |
| 6cy5A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.63 | 42.0 | 4.12e-01 | 89.9% | 61.8% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 33.0 | 3.43e-01 | 98.7% | 51.4% |
| 1pq4A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.63 | 56.0 | 4.52e-01 | 100.0% | 87.5% |
| 4houB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 46.0 | 3.33e-01 | 81.0% | 55.0% |
| 8gf5C01 | 3.30.70.470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 53.0 | 4.46e-01 | 100.0% | 86.6% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 50.0 | 4.22e-01 | 94.9% | 87.8% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.59 | 43.0 | 4.70e-01 | 92.4% | 98.4% |
| 2bk9A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 49.0 | 4.03e-01 | 93.7% | 86.9% |
| 4g4sO01 | 3.40.50.12120 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › POC1 chaperone | 0.58 | 50.0 | 3.82e-01 | 100.0% | 88.5% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 46.0 | 3.10e-01 | 91.1% | 89.8% |
| 3feyA02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 45.0 | 3.36e-01 | 96.2% | 35.4% |
| 1ywfA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 49.0 | 3.48e-01 | 100.0% | 67.2% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.55 | 47.0 | 3.97e-01 | 98.7% | 80.4% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.53 | 45.0 | 3.52e-01 | 100.0% | 43.1% |
| 5c5dD00 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 44.0 | 3.60e-01 | 97.5% | 81.1% |
| 1zcjA03 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.50 | 38.0 | 3.24e-01 | 83.5% | 82.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3234580 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.67 | 47.0 | 3.49e-01 | 72.2% | 86.2% |
| 2321070 | 109.4.1.127 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like | 0.67 | 47.0 | 3.48e-01 | 72.2% | 51.3% |
| 4977761 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.60 | 51.0 | 4.87e-01 | 100.0% | 78.9% |
| 4965830 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.60 | 42.0 | 3.04e-01 | 74.7% | 37.0% |
| 4567807 | 397.7.1.6 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 | 0.59 | 44.0 | 4.73e-01 | 88.6% | 95.4% |
| None | — | 0.59 | 48.0 | 3.31e-01 | 86.1% | 35.5% | |
| 3501148 | 109.4.1.2498 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF1266, PF27158, PF30223 | 0.59 | 42.0 | 2.53e-01 | 77.2% | 53.1% |
| 3789472 | 108.1.1.50 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Rad33 | 0.57 | 41.0 | 3.88e-01 | 88.6% | 62.1% |
| 4008632 | 3350.1.1.4 ↗ | alpha bundles › Peroxisomal biogenesis factor 3 › Peroxisomal biogenesis factor 3 › Peroxisomal biogenesis factor 3 › PrkA, AAA_PrkA | 0.57 | 50.0 | 4.10e-01 | 100.0% | 76.7% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.57 | 49.0 | 4.48e-01 | 98.7% | 72.4% |
| 3948139 | 2485.1.1.81 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › TraF | 0.56 | 46.0 | 3.64e-01 | 88.6% | 80.0% |
| 3735057 | 109.4.1.1646 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Foie-gras_1, PF29907 | 0.56 | 39.0 | 2.40e-01 | 75.9% | 11.6% |
| 3687279 | 109.4.1.150 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core | 0.55 | 52.0 | 2.90e-01 | 100.0% | 11.9% |
| 3632076 | 109.4.1.150 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core | 0.55 | 51.0 | 2.84e-01 | 100.0% | 11.5% |
| 3822155 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 47.0 | 3.88e-01 | 97.5% | 76.6% |
| 3756888 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.54 | 37.0 | 3.04e-01 | 72.2% | 71.2% |
| 3733818 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 47.0 | 3.31e-01 | 100.0% | 66.9% |
| 3645790 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 40.0 | 3.19e-01 | 78.5% | 90.0% |
| 3682674 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 46.0 | 3.63e-01 | 97.5% | 81.7% |
| 3536813 | 1008.1.1.30 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › EVC2_like | 0.53 | 43.0 | 2.57e-01 | 89.9% | 28.7% |
| 3380724 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.53 | 48.0 | 3.36e-01 | 100.0% | 42.8% |
| 3348367 | 109.4.1.1262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long | 0.53 | 49.0 | 3.02e-01 | 100.0% | 24.9% |
| 4431924 | 6058.1.1.1 ↗ | alpha arrays › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › DAO_C | 0.53 | 41.0 | 3.53e-01 | 100.0% | 50.4% |
| 3742809 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 48.0 | 3.96e-01 | 100.0% | 69.6% |
| 4029498 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 41.0 | 2.51e-01 | 88.6% | 15.6% |
| 3601725 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 2.44e-01 | 89.9% | 21.3% |
| 3537971 | 4156.1.1.1 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 | 0.51 | 39.0 | 3.26e-01 | 84.8% | 79.3% |
| 3463534 | 101.1.10.57 ↗ | alpha arrays › HTH › HTH › Cyclin-like › AAA_34 | 0.51 | 38.0 | 3.51e-01 | 78.5% | 83.0% |
| 4165373 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.50 | 41.0 | 2.86e-01 | 93.7% | 83.7% |