Back to structures

NC_054726.1__YP_010059486.1__KHQ86_gp010__00010

Bact-Vir

NC_054726.1__YP_010059486.1__KHQ86_gp010__00010

Identity

Accession:
NC_054726 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-111
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23897.2 best DUF7245 94.9 5.10e-27 100.0% 51.3%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 71.0 6.25e-01 100.0% 66.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 62.0 6.29e-01 100.0% 82.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 64.0 6.22e-01 100.0% 79.0%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 68.0 6.62e-01 100.0% 85.5%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.78 51.0 4.58e-01 93.0% 48.8%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 61.0 5.65e-01 100.0% 69.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.74 57.0 5.65e-01 100.0% 80.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 57.0 5.81e-01 100.0% 87.0%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.70 52.0 4.41e-01 80.7% 85.3%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.66 45.0 3.10e-01 70.2% 64.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.56e-01 100.0% 92.2%
3irbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 48.0 4.55e-01 80.7% 98.5%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 45.0 3.43e-01 73.7% 39.8%
3dlbB03 2.170.260.50 Mainly Beta › Beta Complex › paz domain › 0.64 53.0 4.78e-01 100.0% 85.1%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 45.0 3.73e-01 75.4% 97.1%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 4.70e-01 100.0% 61.3%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 4.33e-01 93.0% 70.8%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.59 50.0 4.35e-01 100.0% 66.7%
5je6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 50.0 3.29e-01 96.5% 93.1%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.84e-01 100.0% 61.3%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 3.83e-01 96.5% 84.2%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.57e-01 94.7% 79.5%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 2.87e-01 86.0% 95.9%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.54 33.0 3.16e-01 73.7% 47.1%
4b9wA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 3.43e-01 86.0% 75.9%
1egiA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 47.0 3.66e-01 100.0% 82.9%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 2.82e-01 96.5% 48.1%
7solA02 3.10.290.60 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain 0.54 44.0 3.68e-01 93.0% 76.7%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.54 40.0 3.95e-01 91.2% 74.6%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 42.0 2.87e-01 93.0% 35.7%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.79e-01 94.7% 81.5%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 66.0 6.47e-01 100.0% 76.7%
3691144 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 70.0 6.49e-01 100.0% 88.6%
3997130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 69.0 5.67e-01 100.0% 80.0%
3723834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 70.0 6.48e-01 100.0% 88.6%
3242957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 68.0 4.98e-01 100.0% 67.6%
3931055 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.75 68.0 6.17e-01 100.0% 78.7%
2157301 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.74 67.0 6.18e-01 100.0% 79.5%
4026274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 64.0 4.79e-01 100.0% 39.3%
3764452 4.8.1.41 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF4708 0.74 67.0 5.18e-01 100.0% 64.2%
4185615 4.1.1.331 beta barrels › SH3 › SH3 › SH3 › DUF4708 0.74 67.0 5.17e-01 100.0% 64.2%
3886492 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.73 68.0 6.13e-01 100.0% 76.0%
3818610 4.1.1.324 beta barrels › SH3 › SH3 › SH3 › Nodulin_C 0.73 65.0 5.52e-01 100.0% 92.5%
3399965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.22e-01 100.0% 61.1%
3937661 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 53.0 5.10e-01 80.7% 75.4%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.34e-01 100.0% 70.6%
3793311 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 61.0 6.00e-01 100.0% 96.7%
4293453 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 4.98e-01 100.0% 65.0%
3665228 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 37.0 4.22e-01 73.7% 77.5%
3479042 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.47e-01 100.0% 84.3%
3500084 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.48e-01 100.0% 90.0%
3936225 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.17e-01 100.0% 81.4%
4965187 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 48.0 4.64e-01 84.2% 95.4%
3576812 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.60 41.0 3.55e-01 73.7% 70.5%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.09e-01 100.0% 56.4%
3214812 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.59 44.0 3.80e-01 82.5% 57.4%
197051 4.1.1.74 beta barrels › SH3 › SH3 › SH3 › DUF3247 0.59 50.0 4.35e-01 100.0% 66.7%
3721944 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 50.0 3.11e-01 100.0% 29.9%
3268771 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 41.0 3.26e-01 73.7% 43.3%
3226466 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 40.0 3.14e-01 73.7% 43.8%
3504767 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.58 43.0 4.09e-01 82.5% 74.3%
4038118 2003.1.2.102 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.58 48.0 2.83e-01 96.5% 37.5%
3854465 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.57 45.0 3.58e-01 87.7% 76.7%
3811281 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 4.00e-01 87.7% 78.8%
4406339 2003.1.2.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.57 47.0 3.41e-01 100.0% 96.2%
4103142 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.56 42.0 3.77e-01 82.5% 83.7%
3681964 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.55 41.0 2.73e-01 86.0% 55.4%
5011794 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 44.0 3.36e-01 100.0% 91.3%
3662984 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 3.79e-01 93.0% 90.6%
3267336 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.52 32.0 3.57e-01 86.0% 94.3%
None 0.52 44.0 2.74e-01 100.0% 53.5%
4570706 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 44.0 2.68e-01 100.0% 48.5%
3536274 220.1.1.55 beta barrels › PH domain-like › PH domain-like › PH domain-like › SYCP2_SLD 0.51 42.0 3.42e-01 98.2% 62.5%
D2 medium residues 1-50
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23897.2 best DUF7245 58.5 9.30e-16 100.0% 42.9%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yqpA00 3.30.60.220 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.67 50.0 4.76e-01 94.0% 68.3%
4gnfA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 55.0 4.52e-01 100.0% 77.1%
2od1A00 6.10.140.2220 Special › Helix non-globular › Helix Hairpins › 0.61 44.0 4.42e-01 86.0% 78.0%
3l11A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 46.0 3.74e-01 94.0% 96.2%
2kyuA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 40.0 3.78e-01 86.0% 98.5%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3891700 904.1.1.26 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box_Trim66 0.80 53.0 5.50e-01 70.0% 75.6%
3422360 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.78 52.0 5.87e-01 78.0% 100.0%
3894356 904.1.1.25 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › NOA36 0.78 56.0 4.95e-01 76.0% 70.0%
3551494 904.1.1.26 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box_Trim66 0.77 51.0 5.31e-01 70.0% 75.6%
3746408 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.75 52.0 5.40e-01 72.0% 82.2%
3474551 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.75 52.0 4.93e-01 74.0% 68.3%
3578281 375.1.1.186 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NOA36 0.74 53.0 4.88e-01 76.0% 78.5%
3567109 904.1.1.3 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX 0.73 49.0 4.64e-01 70.0% 78.3%
3895529 904.1.1.35 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-UBP_var 0.73 50.0 5.22e-01 72.0% 84.4%
3700937 377.9.1.2 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.71 48.0 5.24e-01 78.0% 90.0%
3229366 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.70 48.0 4.66e-01 72.0% 65.5%
4940794 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 47.0 4.79e-01 72.0% 86.0%
3816895 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.69 46.0 5.00e-01 70.0% 90.0%
3890373 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.69 47.0 4.73e-01 72.0% 72.0%
5051696 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 46.0 4.53e-01 72.0% 96.4%
3276133 377.9.1.2 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.67 45.0 4.25e-01 84.0% 58.3%
3734205 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.66 45.0 3.13e-01 74.0% 22.2%
3342751 376.1.3.24 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › NSD_PHD 0.64 55.0 4.01e-01 100.0% 50.7%
3761028 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.64 42.0 2.88e-01 70.0% 17.4%
3344431 377.9.1.2 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.64 47.0 4.91e-01 92.0% 91.1%
3935895 377.9.1.2 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.64 46.0 4.90e-01 86.0% 97.5%
3865540 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.64 43.0 2.97e-01 70.0% 19.4%
4597950 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 43.0 3.05e-01 74.0% 21.8%
3863039 377.9.1.2 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.63 45.0 4.45e-01 78.0% 76.4%
3895252 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.62 41.0 2.81e-01 70.0% 17.4%
4283960 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 41.0 2.49e-01 70.0% 10.0%
3879403 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.60 40.0 2.73e-01 70.0% 17.0%
3418010 377.9.1.1 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.60 42.0 4.53e-01 80.0% 97.5%
3900532 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 48.0 4.44e-01 92.0% 92.3%
3895782 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.59 39.0 3.46e-01 70.0% 42.5%
4248675 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.59 40.0 2.72e-01 72.0% 16.7%
4088673 377.1.1.11 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.59 40.0 2.92e-01 74.0% 22.4%
3803136 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.55 45.0 3.56e-01 94.0% 50.0%
3781281 377.9.1.4 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-Mss51 0.55 40.0 3.62e-01 84.0% 62.7%