←Back to structures
NC_054726.1__YP_010059531.1__KHQ86_gp055__00055
Bact-VirNC_054726.1__YP_010059531.1__KHQ86_gp055__00055
Identity
- Accession:
- NC_054726 ↗
- Kingdom:
- phage
Quality
79.1
mean pLDDT
Taxonomy
TaxID: 2656541
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-63
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.70 | 48.0 | 2.99e-01 | 74.1% | 11.9% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.69 | 54.0 | 3.81e-01 | 86.2% | 28.9% |
| 3d2fA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.67 | 54.0 | 4.95e-01 | 98.3% | 66.7% |
| 4gniA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.66 | 54.0 | 4.79e-01 | 93.1% | 65.1% |
| 6rzqA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.65 | 54.0 | 4.82e-01 | 98.3% | 65.9% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.65 | 49.0 | 3.96e-01 | 84.5% | 58.3% |
| 2xssA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.65 | 58.0 | 4.22e-01 | 100.0% | 89.1% |
| 2eshA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 46.0 | 3.84e-01 | 82.8% | 50.0% |
| 3fv6A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.63 | 52.0 | 3.97e-01 | 93.1% | 89.7% |
| 6yiiA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.60 | 44.0 | 2.90e-01 | 77.6% | 49.6% |
| 2uvaG01 | 1.20.1050.120 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 41.0 | 3.05e-01 | 72.4% | 43.4% |
| 6xwlE02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.58 | 43.0 | 3.35e-01 | 81.0% | 91.2% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.58 | 45.0 | 4.02e-01 | 89.7% | 80.4% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.58 | 41.0 | 3.12e-01 | 74.1% | 31.7% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.58 | 45.0 | 3.70e-01 | 98.3% | 44.2% |
| 1ex0B02 | 3.90.260.10 | Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like | 0.57 | 43.0 | 2.79e-01 | 87.9% | 48.4% |
| 1mhyD00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.56 | 46.0 | 2.76e-01 | 100.0% | 41.2% |
| 2v1xA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 3.59e-01 | 86.2% | 79.1% |
| 1mknA00 | 2.20.60.10 | Mainly Beta › Single Sheet › Heparin-binding Growth Factor, Midkine; Chain A › Pleiotrophin/Midkine, N-terminal domain | 0.54 | 35.0 | 3.53e-01 | 74.1% | 64.4% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 40.0 | 3.22e-01 | 77.6% | 94.3% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 43.0 | 3.43e-01 | 84.5% | 57.8% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 33.0 | 3.40e-01 | 79.3% | 61.4% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 42.0 | 3.46e-01 | 84.5% | 77.1% |
| 4cllA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 41.0 | 2.85e-01 | 84.5% | 48.1% |
| 4xhpA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 43.0 | 3.31e-01 | 100.0% | 36.7% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.53 | 44.0 | 2.93e-01 | 100.0% | 47.0% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 33.0 | 2.92e-01 | 82.8% | 38.5% |
| 2i6vA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 35.0 | 3.14e-01 | 70.7% | 58.6% |
| 5hn3A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.52 | 41.0 | 2.59e-01 | 87.9% | 81.3% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 37.0 | 2.49e-01 | 75.9% | 95.5% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 3.46e-01 | 89.7% | 69.5% |
| 4l2iB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 37.0 | 2.44e-01 | 75.9% | 18.3% |
| 4q6rA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 39.0 | 2.96e-01 | 81.0% | 67.2% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.51 | 43.0 | 3.16e-01 | 100.0% | 35.1% |
| 1hywA00 | 3.30.1580.10 | Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W | 0.51 | 38.0 | 3.87e-01 | 84.5% | 81.0% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 38.0 | 3.21e-01 | 93.1% | 44.1% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 36.0 | 2.87e-01 | 75.9% | 86.4% |
| 4bq6F00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 38.0 | 2.93e-01 | 84.5% | 63.8% |
| 3mweB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 42.0 | 3.33e-01 | 100.0% | 73.9% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 32.0 | 3.18e-01 | 82.8% | 57.6% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3876012 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.90 | 39.0 | 3.34e-01 | 74.1% | 29.4% |
| 5024335 | 7520.1.1.2 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › HcgF | 0.84 | 61.0 | 4.26e-01 | 77.6% | 25.7% |
| 4984818 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.70 | 48.0 | 3.32e-01 | 72.4% | 23.5% |
| 4946426 | 3241.1.1.0 ↗ | alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 | 0.69 | 39.0 | 2.60e-01 | 100.0% | 14.0% |
| 4940950 | 101.1.2.143 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_34 | 0.69 | 36.0 | 3.26e-01 | 98.3% | 36.3% |
| 2834311 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.68 | 53.0 | 5.38e-01 | 84.5% | 96.6% |
| 3797522 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 38.0 | 3.15e-01 | 96.6% | 33.0% |
| 1278602 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.67 | 47.0 | 4.68e-01 | 74.1% | 71.7% |
| 4048866 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.66 | 50.0 | 3.74e-01 | 82.8% | 33.3% |
| 3253715 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.66 | 53.0 | 3.83e-01 | 91.4% | 30.9% |
| 3274159 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 48.0 | 3.95e-01 | 82.8% | 43.5% |
| 3521006 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.64 | 46.0 | 3.19e-01 | 77.6% | 30.0% |
| 3653902 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.64 | 53.0 | 3.73e-01 | 100.0% | 26.5% |
| 4998174 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.64 | 42.0 | 2.84e-01 | 84.5% | 21.7% |
| 4880634 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.64 | 43.0 | 4.38e-01 | 72.4% | 71.2% |
| 4215095 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.64 | 54.0 | 3.43e-01 | 100.0% | 43.5% |
| 4627505 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.63 | 52.0 | 3.79e-01 | 100.0% | 30.8% |
| 1507770 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.63 | 43.0 | 4.45e-01 | 70.7% | 87.0% |
| 141070 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.62 | 44.0 | 4.44e-01 | 75.9% | 82.5% |
| 4926994 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.62 | 50.0 | 4.07e-01 | 86.2% | 73.1% |
| 3265225 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.62 | 39.0 | 2.36e-01 | 79.3% | 11.4% |
| 3603113 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.60 | 44.0 | 3.36e-01 | 79.3% | 34.5% |
| 4989946 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.60 | 44.0 | 3.48e-01 | 75.9% | 77.3% |
| 4996670 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 4.00e-01 | 86.2% | 87.8% |
| 3388135 | 4292.2.1.1 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG | 0.58 | 44.0 | 4.06e-01 | 82.8% | 62.7% |
| 3660452 | 309.1.1.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16 | 0.58 | 42.0 | 2.91e-01 | 75.9% | 32.8% |
| 4978596 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.58 | 45.0 | 3.58e-01 | 86.2% | 67.2% |
| 3628907 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.58 | 49.0 | 2.69e-01 | 93.1% | 30.0% |
| 3602310 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.58 | 47.0 | 3.70e-01 | 93.1% | 92.3% |
| 3493539 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.58 | 43.0 | 3.36e-01 | 82.8% | 36.3% |
| 5041315 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.58 | 43.0 | 3.71e-01 | 84.5% | 54.0% |
| 3519344 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 46.0 | 2.84e-01 | 86.2% | 63.6% |
| 3213128 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.57 | 47.0 | 3.85e-01 | 93.1% | 75.5% |
| 3243593 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 43.0 | 3.70e-01 | 87.9% | 93.3% |
| 3520970 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.56 | 43.0 | 3.17e-01 | 93.1% | 28.2% |
| 3581762 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 42.0 | 3.56e-01 | 84.5% | 78.1% |
| 3644266 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 3.69e-01 | 86.2% | 82.0% |
| 3590189 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.56 | 43.0 | 3.15e-01 | 84.5% | 64.4% |
| 5002173 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 38.0 | 3.29e-01 | 70.7% | 64.4% |
| 5001284 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.55 | 42.0 | 3.10e-01 | 82.8% | 51.2% |
| 4928075 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 39.0 | 3.52e-01 | 75.9% | 87.5% |
| 5039582 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 3.56e-01 | 89.7% | 81.9% |
| 5021275 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 36.0 | 2.95e-01 | 72.4% | 54.5% |
| 5071269 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.53 | 43.0 | 2.93e-01 | 89.7% | 38.6% |
| 3993677 | 823.1.1.0 ↗ | a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW | 0.53 | 40.0 | 3.82e-01 | 84.5% | 68.6% |
| 4348606 | 4.1.1.440 ↗ | beta barrels › SH3 › SH3 › SH3 › PF27165 | 0.53 | 35.0 | 3.40e-01 | 86.2% | 61.5% |
| 4080507 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.51 | 43.0 | 3.57e-01 | 100.0% | 100.0% |
| 4959991 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 34.0 | 3.24e-01 | 81.0% | 55.7% |
| 3934401 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.55e-01 | 98.3% | 99.1% |
| 5079768 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 37.0 | 3.39e-01 | 82.8% | 56.0% |
| 3926000 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.51 | 44.0 | 2.73e-01 | 100.0% | 37.5% |
| 3481511 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 35.0 | 3.29e-01 | 84.5% | 57.3% |
| 3714703 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.51 | 40.0 | 3.34e-01 | 87.9% | 50.0% |
| 3882804 | 263.1.1.4 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › PRAS_NT | 0.51 | 40.0 | 3.90e-01 | 96.6% | 78.1% |
| 4964910 | 300.1.1.25 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › TbsP_N | 0.51 | 34.0 | 2.59e-01 | 72.4% | 28.6% |
| 4945774 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 36.0 | 3.05e-01 | 75.9% | 48.0% |
| 3614215 | 2004.1.1.427 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N | 0.50 | 44.0 | 2.68e-01 | 98.3% | 22.6% |