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NC_054726.1__YP_010059544.1__KHQ86_gp068__00068

Bact-Vir

NC_054726.1__YP_010059544.1__KHQ86_gp068__00068

Identity

Accession:
NC_054726 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stormageddonvirus› Gordonia_phage_Stormageddon

TaxID: 2656541

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-108
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23874.2 best Phage_Hfq 143.0 4.10e-42 95.7% 89.8%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.89 57.0 7.08e-01 70.7% 100.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.89 58.0 6.78e-01 70.7% 92.4%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.89 58.0 6.78e-01 71.7% 92.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.86 52.0 4.99e-01 71.7% 54.9%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 54.0 6.45e-01 70.7% 100.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 64.0 6.65e-01 93.5% 94.2%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.77 53.0 5.37e-01 71.7% 80.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.75 55.0 5.99e-01 76.1% 96.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.61e-01 73.9% 83.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 43.0 4.93e-01 70.7% 78.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.29e-01 71.7% 84.5%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.72 46.0 4.58e-01 70.7% 61.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 4.72e-01 71.7% 82.2%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 45.0 3.64e-01 71.7% 100.0%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 44.0 3.94e-01 71.7% 53.6%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.63 49.0 5.31e-01 92.4% 100.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.66e-01 70.7% 95.9%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.61 45.0 3.93e-01 77.2% 73.2%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.67e-01 84.8% 84.7%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 43.0 3.84e-01 76.1% 52.7%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.60 42.0 4.02e-01 72.8% 64.2%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.59 41.0 4.05e-01 72.8% 67.0%
3fzqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.59 41.0 3.83e-01 72.8% 68.7%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 40.0 3.27e-01 70.7% 52.6%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 3.70e-01 76.1% 68.8%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.57 38.0 3.28e-01 100.0% 44.7%
1k7jA00 3.90.870.10 Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase 0.55 39.0 3.01e-01 73.9% 76.1%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 4.02e-01 75.0% 85.5%
2lktA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 47.0 4.29e-01 100.0% 96.8%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 35.0 3.37e-01 70.7% 80.9%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 36.0 3.10e-01 72.8% 48.0%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 35.0 3.54e-01 72.8% 76.1%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4540843 4.1.1.434 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2642 0.93 60.0 7.16e-01 72.8% 93.8%
135648 4.1.1.142 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.90 59.0 7.07e-01 70.7% 95.4%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.90 58.0 7.09e-01 71.7% 98.4%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.89 59.0 6.34e-01 71.7% 77.5%
4432348 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.89 58.0 6.72e-01 76.1% 89.7%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 59.0 7.12e-01 70.7% 100.0%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.88 55.0 6.82e-01 70.7% 98.3%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 54.0 6.17e-01 70.7% 82.9%
139950 4.1.1.126 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5608 0.86 52.0 6.50e-01 71.7% 100.0%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 51.0 6.48e-01 71.7% 100.0%
4332042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 56.0 6.34e-01 73.9% 88.6%
4380345 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.83 57.0 5.95e-01 70.7% 77.6%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 58.0 6.46e-01 72.8% 100.0%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 67.0 7.13e-01 90.2% 98.8%
4957350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 52.0 6.08e-01 71.7% 92.3%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.81 67.0 6.84e-01 98.9% 90.0%
4041376 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.81 57.0 6.10e-01 72.8% 87.5%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.79 53.0 6.22e-01 75.0% 96.9%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.78 53.0 6.22e-01 75.0% 98.5%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.78 49.0 5.73e-01 76.1% 90.8%
3704305 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.77 55.0 6.28e-01 73.9% 100.0%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.77 56.0 6.22e-01 83.7% 93.3%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.77 54.0 5.74e-01 72.8% 92.5%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.76 55.0 6.11e-01 76.1% 92.0%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.76 65.0 6.58e-01 97.8% 92.2%
5057445 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.76 47.0 4.95e-01 70.7% 68.2%
3507639 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.75 53.0 5.99e-01 75.0% 97.1%
3198731 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.75 51.0 4.47e-01 72.8% 49.2%
4121981 4.1.1.325 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.74 49.0 4.39e-01 73.9% 49.6%
4927654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.83e-01 71.7% 98.5%
4287411 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.73 51.0 5.48e-01 73.9% 83.7%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.59e-01 72.8% 91.4%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 45.0 5.40e-01 71.7% 95.0%
2321269 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.73 51.0 5.29e-01 71.7% 84.5%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.72 43.0 5.32e-01 75.0% 100.0%
3387378 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 50.0 5.20e-01 71.7% 85.9%
5017161 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.72 50.0 5.24e-01 75.0% 77.6%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.72 50.0 5.23e-01 73.9% 77.6%
5021635 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.70 49.0 4.05e-01 71.7% 44.2%
4403216 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 46.0 5.18e-01 71.7% 88.6%
3451171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 46.0 5.30e-01 71.7% 95.4%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.10e-01 75.0% 100.0%
3181766 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.68 46.0 5.01e-01 71.7% 84.0%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.68 46.0 3.76e-01 72.8% 38.8%
3296865 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.67 46.0 4.42e-01 73.9% 61.9%
3486329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 45.0 5.27e-01 71.7% 98.5%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.88e-01 72.8% 84.7%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.66 45.0 5.24e-01 71.7% 98.5%
3357239 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.65 48.0 4.03e-01 78.3% 84.2%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 3.65e-01 79.3% 46.7%
1759629 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.64 41.0 3.92e-01 70.7% 55.1%
3279614 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.64 43.0 3.64e-01 73.9% 41.3%
3964944 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 43.0 3.74e-01 75.0% 45.7%
4317167 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.63 43.0 4.64e-01 71.7% 85.0%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 3.33e-01 76.1% 40.9%
3625264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.35e-01 76.1% 92.6%