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NC_054726.1__YP_010059565.1__KHQ86_gp210__00089

Bact-Vir

NC_054726.1__YP_010059565.1__KHQ86_gp210__00089

Identity

Accession:
NC_054726 ↗
Kingdom:
phage

Quality

65.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-61
PDB
Domain cluster: representative
CATH (68)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.75 54.0 4.06e-01 100.0% 30.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.70 59.0 4.19e-01 100.0% 91.0%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 49.0 4.02e-01 86.0% 42.0%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.68 55.0 4.87e-01 94.0% 94.7%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 52.0 3.79e-01 86.0% 31.3%
6ixwB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 52.0 3.58e-01 84.0% 60.5%
3szpB02 3.40.190.290 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.66 47.0 3.15e-01 76.0% 33.2%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 51.0 3.85e-01 98.0% 34.4%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.66 50.0 3.78e-01 82.0% 78.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.65 55.0 4.63e-01 100.0% 91.3%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.65 56.0 4.27e-01 100.0% 52.0%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 53.0 3.72e-01 96.0% 28.1%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 54.0 4.37e-01 96.0% 50.0%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.64 56.0 4.22e-01 100.0% 53.3%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 50.0 4.35e-01 88.0% 57.5%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 53.0 3.74e-01 94.0% 30.3%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 53.0 4.22e-01 98.0% 56.0%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 46.0 3.92e-01 80.0% 78.8%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.63 55.0 4.04e-01 100.0% 94.2%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 43.0 4.20e-01 80.0% 64.9%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 52.0 4.31e-01 98.0% 57.3%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 3.99e-01 100.0% 94.2%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 45.0 4.38e-01 100.0% 69.5%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.62 46.0 4.41e-01 80.0% 100.0%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 48.0 4.19e-01 100.0% 55.7%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.61 53.0 3.18e-01 100.0% 71.1%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.42e-01 100.0% 58.3%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.38e-01 86.0% 74.2%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 49.0 3.46e-01 92.0% 74.1%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.60 49.0 3.09e-01 92.0% 39.8%
1e0yA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 49.0 3.83e-01 92.0% 49.5%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.60 51.0 3.10e-01 100.0% 71.4%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 51.0 4.42e-01 100.0% 93.8%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 48.0 3.47e-01 94.0% 80.9%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.17e-01 100.0% 53.7%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.59 50.0 4.31e-01 100.0% 60.3%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 48.0 4.04e-01 98.0% 67.4%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.58 41.0 3.96e-01 82.0% 65.6%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.68e-01 96.0% 50.4%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 3.82e-01 100.0% 54.7%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 45.0 3.42e-01 90.0% 76.3%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 3.59e-01 100.0% 44.9%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 46.0 3.55e-01 96.0% 43.7%
3mdnD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 48.0 3.21e-01 100.0% 26.5%
3pm9A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 45.0 3.48e-01 92.0% 41.8%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 38.0 3.08e-01 74.0% 89.9%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.56 45.0 3.18e-01 100.0% 57.3%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 49.0 3.30e-01 100.0% 97.4%
3etbL00 2.60.40.810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 47.0 3.49e-01 100.0% 42.0%
2m4vA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.55 45.0 3.96e-01 96.0% 65.0%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 43.0 3.60e-01 100.0% 87.3%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.37e-01 100.0% 70.5%
1zr6A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 43.0 3.21e-01 92.0% 32.6%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 45.0 3.84e-01 96.0% 98.8%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 48.0 4.33e-01 100.0% 77.9%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 3.49e-01 100.0% 49.2%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.54 40.0 3.30e-01 86.0% 43.3%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 47.0 4.19e-01 100.0% 80.6%
3dlqR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.40e-01 100.0% 44.0%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 46.0 4.25e-01 100.0% 89.1%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 37.0 2.59e-01 78.0% 74.2%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.52 37.0 3.57e-01 100.0% 64.2%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.21e-01 100.0% 64.8%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.51 45.0 3.90e-01 98.0% 75.6%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 40.0 3.76e-01 96.0% 100.0%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.51 42.0 3.25e-01 100.0% 45.5%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 41.0 3.52e-01 100.0% 83.0%
3v67A01 3.30.450.210 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain 0.50 36.0 2.88e-01 82.0% 85.1%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.73 54.0 5.12e-01 80.0% 75.0%
3972526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 56.0 5.07e-01 88.0% 94.3%
3698542 1.1.2.2 beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.71 57.0 3.80e-01 90.0% 35.6%
224066 822.3.1.1 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.71 56.0 4.93e-01 90.0% 93.5%
3987692 822.3.1.1 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.70 58.0 5.24e-01 100.0% 67.1%
1096061 3375.1.1.1 beta barrels › Single-stranded DNA-binding protein DdrB › Single-stranded DNA-binding protein DdrB › Single-stranded DNA-binding protein DdrB › DdrB 0.69 48.0 3.65e-01 76.0% 29.7%
4961379 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.68 52.0 3.47e-01 88.0% 22.7%
5047427 75.1.1.4 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like 0.66 48.0 3.64e-01 78.0% 99.2%
3615237 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.66 56.0 3.40e-01 100.0% 46.7%
5040024 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 58.0 4.46e-01 100.0% 54.5%
3367439 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.65 54.0 3.42e-01 92.0% 25.8%
3933347 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 4.55e-01 100.0% 57.9%
3596308 11.1.4.80 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › C2_ITFG1 0.64 55.0 4.04e-01 100.0% 58.6%
5039912 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 50.0 3.92e-01 92.0% 43.5%
3227231 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.62 47.0 4.40e-01 84.0% 68.3%
5027350 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.62 53.0 3.93e-01 100.0% 37.0%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.61 52.0 3.85e-01 100.0% 36.3%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.61 47.0 4.90e-01 100.0% 97.8%
4325812 11.1.5.85 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.61 50.0 3.28e-01 98.0% 23.7%
3244352 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 45.0 3.71e-01 100.0% 43.2%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.60 52.0 4.36e-01 100.0% 87.8%
3599827 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 3.63e-01 100.0% 46.5%
4122119 11.1.1.335 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.60 48.0 3.89e-01 100.0% 46.3%
4271892 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.60 50.0 3.82e-01 98.0% 54.4%
4988123 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 52.0 4.03e-01 100.0% 44.3%
5014007 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.59 52.0 5.06e-01 100.0% 90.9%
4997494 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.57 47.0 3.18e-01 100.0% 24.1%
4566976 375.14.2.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) 0.55 38.0 4.05e-01 100.0% 95.0%
4148861 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 42.0 3.18e-01 90.0% 95.9%
4304758 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.54 46.0 3.33e-01 100.0% 46.5%
3250477 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 36.0 2.86e-01 70.0% 33.6%
3940858 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 34.0 3.16e-01 100.0% 45.7%
4135543 221.1.1.17 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.53 41.0 3.37e-01 100.0% 84.0%
3581044 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.52 43.0 3.74e-01 100.0% 63.5%
4662939 1077.1.1.1 few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS 0.51 39.0 3.51e-01 84.0% 100.0%
3596155 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.14e-01 90.0% 66.1%