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NC_054726.1__YP_010059609.1__KHQ86_gp166__00133
Bact-VirNC_054726.1__YP_010059609.1__KHQ86_gp166__00133
Identity
- Accession:
- NC_054726 ↗
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Taxonomy
TaxID: 2656541
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-72
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qftB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.67 | 51.0 | 3.54e-01 | 85.1% | 24.3% |
| 1wnhA02 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 49.0 | 3.71e-01 | 91.5% | 31.7% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.67 | 54.0 | 3.53e-01 | 95.7% | 19.2% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.65 | 44.0 | 3.23e-01 | 83.0% | 23.9% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.62 | 47.0 | 3.02e-01 | 87.2% | 18.3% |
| 6wo0A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.62 | 44.0 | 2.93e-01 | 85.1% | 17.4% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.62 | 47.0 | 4.80e-01 | 91.5% | 89.1% |
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 43.0 | 3.05e-01 | 85.1% | 22.9% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.59 | 40.0 | 3.87e-01 | 87.2% | 59.6% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.59 | 38.0 | 3.04e-01 | 87.2% | 29.8% |
| 2fjlA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 41.0 | 2.99e-01 | 95.7% | 24.7% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 44.0 | 3.60e-01 | 85.1% | 52.1% |
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.58 | 40.0 | 3.52e-01 | 87.2% | 44.9% |
| 2zbbA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 40.0 | 3.43e-01 | 87.2% | 44.4% |
| 3dohA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 45.0 | 2.91e-01 | 91.5% | 32.5% |
| 1pvgA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.57 | 38.0 | 2.48e-01 | 70.2% | 27.5% |
| 4exoA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 41.0 | 3.00e-01 | 91.5% | 26.0% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 46.0 | 3.63e-01 | 100.0% | 73.9% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 46.0 | 3.53e-01 | 93.6% | 75.2% |
| 7xlqD01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 41.0 | 3.17e-01 | 89.4% | 31.8% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.55 | 38.0 | 2.47e-01 | 74.5% | 92.9% |
| 3volA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 37.0 | 2.78e-01 | 85.1% | 24.6% |
| 5z0uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 38.0 | 2.94e-01 | 83.0% | 29.0% |
| 2dn6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 36.0 | 2.88e-01 | 95.7% | 28.7% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.55 | 37.0 | 2.71e-01 | 74.5% | 54.3% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 42.0 | 3.01e-01 | 95.7% | 39.2% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 45.0 | 3.56e-01 | 100.0% | 42.0% |
| 8einA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 42.0 | 2.65e-01 | 89.4% | 26.1% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.54 | 43.0 | 3.70e-01 | 93.6% | 53.8% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 37.0 | 3.51e-01 | 91.5% | 56.2% |
| 4owzA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.54 | 42.0 | 3.10e-01 | 89.4% | 46.3% |
| 1maeL00 | 2.60.30.10 | Mainly Beta › Sandwich › Electron Transport Ethylamine Dehydrogenase › Methylamine/Aralkylamine dehydrogenase light chain | 0.54 | 41.0 | 3.20e-01 | 91.5% | 59.7% |
| 6eudA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 41.0 | 2.96e-01 | 93.6% | 61.8% |
| 8enbA01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.53 | 40.0 | 3.45e-01 | 85.1% | 86.7% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.53 | 38.0 | 3.02e-01 | 87.2% | 36.3% |
| 3dsbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 37.0 | 3.05e-01 | 87.2% | 37.6% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.52 | 36.0 | 3.09e-01 | 85.1% | 40.0% |
| 6zj8D01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 37.0 | 2.94e-01 | 85.1% | 33.3% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 40.0 | 3.00e-01 | 93.6% | 32.6% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.51 | 36.0 | 3.14e-01 | 91.5% | 42.7% |
| 2uvaG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 37.0 | 2.81e-01 | 87.2% | 28.7% |
| 4indA01 | 2.60.120.1320 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 36.0 | 2.70e-01 | 80.9% | 68.5% |
| 3fmcC01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 36.0 | 2.38e-01 | 85.1% | 24.1% |
| 7ctpA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 43.0 | 3.26e-01 | 97.9% | 80.8% |
| 1ik3A04 | 3.10.450.60 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 2.92e-01 | 89.4% | 31.3% |
| 1zhhB01 | 3.30.450.220 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain | 0.50 | 36.0 | 2.65e-01 | 85.1% | 24.8% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995179 | 236.3.1.1 ↗ | beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 | 0.68 | 49.0 | 4.09e-01 | 87.2% | 43.5% |
| 4149046 | 243.3.1.60 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5385 | 0.68 | 58.0 | 4.76e-01 | 100.0% | 57.8% |
| 3956463 | 321.1.1.0 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase | 0.68 | 48.0 | 3.02e-01 | 85.1% | 14.1% |
| 3712376 | 2.1.1.225 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 | 0.68 | 43.0 | 3.14e-01 | 80.9% | 25.0% |
| 5029914 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.67 | 54.0 | 5.13e-01 | 95.7% | 76.4% |
| 4935307 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.66 | 47.0 | 4.07e-01 | 89.4% | 46.3% |
| 5031616 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.65 | 47.0 | 4.50e-01 | 87.2% | 67.3% |
| 3647546 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.62 | 44.0 | 4.27e-01 | 87.2% | 67.3% |
| 3808505 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.61 | 46.0 | 3.93e-01 | 87.2% | 48.2% |
| 3420143 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.60 | 44.0 | 3.15e-01 | 85.1% | 24.4% |
| 3586908 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 44.0 | 3.58e-01 | 89.4% | 38.1% |
| 3452042 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.60 | 42.0 | 4.13e-01 | 87.2% | 67.3% |
| 3968190 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 46.0 | 3.70e-01 | 87.2% | 96.8% |
| 4797813 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.59 | 40.0 | 3.87e-01 | 87.2% | 59.6% |
| 3218749 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.59 | 43.0 | 4.10e-01 | 87.2% | 65.0% |
| 3659556 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 42.0 | 4.26e-01 | 89.4% | 82.2% |
| 4941681 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 41.0 | 3.91e-01 | 78.7% | 70.0% |
| 3611425 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 48.0 | 4.08e-01 | 100.0% | 58.8% |
| 4986717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 39.0 | 3.65e-01 | 85.1% | 53.8% |
| 4977713 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.57 | 41.0 | 2.60e-01 | 87.2% | 13.1% |
| 4982570 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.57 | 39.0 | 3.54e-01 | 85.1% | 50.0% |
| 4960051 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 47.0 | 3.27e-01 | 97.9% | 35.1% |
| 3212863 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 47.0 | 2.93e-01 | 100.0% | 17.8% |
| 1506242 | 223.1.1.97 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_2 | 0.56 | 42.0 | 3.04e-01 | 91.5% | 27.0% |
| 3402269 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.56 | 46.0 | 3.54e-01 | 93.6% | 74.5% |
| 3832160 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.56 | 40.0 | 3.10e-01 | 91.5% | 30.0% |
| 3705742 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.56 | 41.0 | 3.88e-01 | 89.4% | 65.5% |
| 3824181 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.55 | 39.0 | 3.76e-01 | 91.5% | 63.3% |
| 5056218 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 47.0 | 4.22e-01 | 100.0% | 74.3% |
| 5029199 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 39.0 | 3.33e-01 | 85.1% | 45.0% |
| 3694265 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.55 | 44.0 | 3.30e-01 | 95.7% | 48.9% |
| 3392407 | 207.1.1.130 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8 | 0.55 | 45.0 | 2.60e-01 | 95.7% | 11.1% |
| 5032539 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 41.0 | 3.83e-01 | 87.2% | 66.2% |
| 5029482 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 41.0 | 3.70e-01 | 93.6% | 63.7% |
| 3788285 | 395.1.1.4 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 | 0.54 | 40.0 | 4.00e-01 | 89.4% | 88.0% |
| 3239338 | 2.2.1.0 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins | 0.54 | 42.0 | 3.85e-01 | 87.2% | 78.5% |
| 3306580 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 32.0 | 3.03e-01 | 83.0% | 40.0% |
| 5051184 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 36.0 | 3.00e-01 | 87.2% | 33.3% |
| 3236475 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 40.0 | 3.02e-01 | 85.1% | 70.4% |
| 3675583 | 2003.1.1.70 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N_2 | 0.53 | 37.0 | 2.61e-01 | 74.5% | 33.9% |
| 3618003 | 389.1.1.112 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29137 | 0.53 | 39.0 | 3.80e-01 | 83.0% | 70.9% |
| 3935534 | 375.1.9.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › SANTA | 0.53 | 45.0 | 3.32e-01 | 100.0% | 70.4% |
| 5052549 | 1.1.7.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Fucose_iso_C | 0.53 | 41.0 | 3.11e-01 | 100.0% | 46.0% |
| 3673071 | 7516.1.1.16 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_43 | 0.53 | 41.0 | 2.74e-01 | 100.0% | 19.2% |
| 3587863 | 3158.1.1.1 ↗ | beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 | 0.52 | 40.0 | 3.52e-01 | 93.6% | 70.6% |
| 3369692 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 32.0 | 2.93e-01 | 80.9% | 36.9% |
| 3801626 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 37.0 | 2.96e-01 | 87.2% | 34.5% |
| 3927710 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 39.0 | 2.79e-01 | 85.1% | 59.4% |
| 3259698 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.52 | 40.0 | 2.47e-01 | 100.0% | 58.5% |
| 3597248 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 42.0 | 3.50e-01 | 100.0% | 60.0% |
| 3513513 | 220.1.1.67 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 | 0.51 | 38.0 | 3.09e-01 | 89.4% | 78.2% |
| 3624410 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 41.0 | 2.52e-01 | 100.0% | 15.7% |
| 3996695 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.50 | 34.0 | 3.36e-01 | 85.1% | 65.5% |
| 3695445 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 36.0 | 2.89e-01 | 85.1% | 32.0% |