←Back to structures

NC_054726.1__YP_010059610.1__KHQ86_gp165__00134

Bact-Vir

NC_054726.1__YP_010059610.1__KHQ86_gp165__00134

Identity

Accession:
NC_054726 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stormageddonvirus› Gordonia_phage_Stormageddon

TaxID: 2656541

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-129
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mgtA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 52.0 6.18e-01 99.2% 98.8%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 41.0 5.16e-01 97.5% 100.0%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 37.0 4.81e-01 71.1% 100.0%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 40.0 4.68e-01 99.2% 89.2%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.63 33.0 3.82e-01 81.8% 69.8%
4o6mA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.58 47.0 3.97e-01 85.1% 82.1%
3cf6E05 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.57 48.0 3.86e-01 92.6% 57.3%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 36.0 3.48e-01 95.9% 55.9%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.56 40.0 4.11e-01 73.6% 93.8%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.55 31.0 3.64e-01 81.0% 79.3%
2rhmC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 3.94e-01 89.3% 86.8%
2bdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 4.01e-01 87.6% 87.7%
3i5pA03 1.20.120.1880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain 0.54 46.0 3.68e-01 93.4% 66.4%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 42.0 3.64e-01 83.5% 79.0%
3zc0D00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 41.0 3.61e-01 83.5% 79.7%
2pt5B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.86e-01 88.4% 85.6%
1khtB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 3.64e-01 88.4% 92.1%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.51 42.0 3.46e-01 90.1% 65.8%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 39.0 3.69e-01 83.5% 85.9%
3lszA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 39.0 3.92e-01 83.5% 89.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3286774 101.1.7.0 ↗ alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C 0.92 80.0 8.38e-01 100.0% 99.1%
3787753 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.65 42.0 4.47e-01 100.0% 75.2%
5045956 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 39.0 4.70e-01 96.7% 93.8%
3243067 101.1.2.577 ↗ alpha arrays › HTH › HTH › winged helix domain › SPK 0.63 54.0 5.54e-01 100.0% 97.4%
3449813 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 38.0 4.55e-01 98.3% 100.0%
3224387 101.1.7.2 ↗ alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › SPK 0.59 52.0 5.24e-01 100.0% 97.5%
3715346 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 3.77e-01 94.2% 55.3%
4027362 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 3.91e-01 94.2% 64.5%
3990219 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.53 38.0 3.29e-01 73.6% 82.6%
3713076 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 3.91e-01 88.4% 70.0%
3651298 5059.1.1.4 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp 0.51 39.0 2.79e-01 81.8% 93.8%
5031803 604.39.1.6 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › QueT 0.50 38.0 3.39e-01 80.2% 60.0%
3718175 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 41.0 3.10e-01 90.9% 43.7%
3706180 2007.2.3.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.50 44.0 3.49e-01 100.0% 78.7%