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NC_054726.1__YP_010059627.1__KHQ86_gp148__00151

Bact-Vir

Identity

Accession:: NC_054726 ↗
Kingdom:: phage

Quality

60.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stormageddonvirus› Gordonia_phage_Stormageddon

TaxID: 2656541

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 71-158

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3peuB00	1.25.40.510	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › GLE1-like	0.66	45.0	3.11e-01	70.5%	52.9%
4n21E00	1.10.287.210	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.62	42.0	3.78e-01	70.5%	72.7%
1rw9A01	1.50.10.100	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase	0.54	47.0	3.14e-01	97.7%	36.9%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3595119	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.65	59.0	3.92e-01	100.0%	26.1%
4012049	874.1.1.0 ↗	a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain	0.64	46.0	4.13e-01	76.1%	81.6%
4998773	3755.3.1.305 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook	0.64	44.0	3.35e-01	70.5%	95.9%
3804939	192.2.1.3 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Rad50_zn_hook	0.63	46.0	3.94e-01	76.1%	72.1%
3712650	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.61	44.0	4.10e-01	75.0%	90.9%
3170621	3755.3.1.305 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook	0.60	43.0	4.05e-01	73.9%	88.6%
3309008	375.1.1.246 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook	0.57	41.0	3.93e-01	76.1%	95.2%
3472576	109.4.1.1504 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26103	0.57	50.0	3.11e-01	100.0%	31.4%
3585082	304.28.1.17 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sterol-sensing	0.57	47.0	2.78e-01	93.2%	65.4%
3497542	626.1.1.1 ↗	alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2	0.56	46.0	3.10e-01	93.2%	54.7%
3199801	5001.1.1.144 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Choline_transpo	0.55	47.0	3.12e-01	98.9%	21.0%
3642639	3922.1.1.269 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook	0.55	39.0	3.76e-01	76.1%	94.3%
3615262	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.55	41.0	2.83e-01	80.7%	62.5%
3274487	605.1.1.155 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1	0.54	46.0	3.80e-01	100.0%	70.3%
3720263	109.4.1.202 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16	0.53	47.0	2.94e-01	100.0%	49.7%

D2 medium residues 11-69

PDB