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NC_054726.1__YP_010059632.1__KHQ86_gp143__00156

Bact-Vir

NC_054726.1__YP_010059632.1__KHQ86_gp143__00156

Identity

Accession:
NC_054726 ↗
Kingdom:
phage

Quality

73.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-70
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 57.0 6.47e-01 88.1% 98.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.79 52.0 5.90e-01 86.6% 88.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 56.0 5.73e-01 89.6% 78.1%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.77 56.0 6.14e-01 97.0% 96.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 6.46e-01 98.5% 98.2%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 55.0 6.25e-01 85.1% 98.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 6.37e-01 89.6% 94.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 58.0 5.65e-01 98.5% 74.0%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 47.0 5.51e-01 80.6% 95.7%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.83e-01 91.0% 98.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 56.0 4.92e-01 92.5% 57.3%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.72 48.0 5.39e-01 89.6% 92.0%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.55e-01 97.0% 74.4%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 4.78e-01 98.5% 44.7%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.12e-01 92.5% 68.7%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 4.79e-01 97.0% 49.6%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 5.18e-01 89.6% 94.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.68e-01 98.5% 90.8%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 5.90e-01 100.0% 96.8%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.69e-01 85.1% 88.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 5.70e-01 98.5% 91.3%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 51.0 4.73e-01 98.5% 67.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.72e-01 100.0% 98.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 4.83e-01 83.6% 70.9%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.65 55.0 4.62e-01 91.0% 56.9%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.65 60.0 5.17e-01 100.0% 75.8%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.63 45.0 5.00e-01 82.1% 98.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 4.05e-01 85.1% 48.7%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.62 57.0 4.10e-01 100.0% 44.3%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 49.0 5.10e-01 92.5% 95.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 56.0 5.44e-01 98.5% 89.3%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.62 57.0 3.90e-01 100.0% 38.8%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 4.82e-01 85.1% 84.7%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.99e-01 85.1% 89.1%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 49.0 3.88e-01 100.0% 42.6%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 51.0 4.22e-01 94.0% 71.3%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.35e-01 83.6% 90.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 48.0 4.10e-01 94.0% 74.3%
2yugA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 47.0 3.67e-01 100.0% 91.0%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.53 42.0 3.24e-01 88.1% 88.7%
3a35A01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 48.0 4.32e-01 100.0% 85.9%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.53 39.0 3.39e-01 82.1% 90.3%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 43.0 4.26e-01 91.0% 98.6%
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.24e-01 82.1% 100.0%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 45.0 3.39e-01 100.0% 54.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.52e-01 91.0% 81.2%
3vsfA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 39.0 3.14e-01 83.6% 98.6%
2lktA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 44.0 3.65e-01 100.0% 57.6%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 34.0 2.77e-01 70.1% 88.7%
1q1uA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 41.0 3.35e-01 94.0% 94.2%
1i8dC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 46.0 4.18e-01 100.0% 80.7%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4369736 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.92 56.0 6.87e-01 88.1% 93.3%
4031578 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.91 61.0 7.03e-01 97.0% 92.0%
4182977 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.90 65.0 6.83e-01 100.0% 83.3%
5042477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 56.0 6.77e-01 91.0% 100.0%
5054668 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 52.0 6.26e-01 95.5% 93.3%
4950396 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 57.0 6.26e-01 91.0% 85.5%
5075805 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 56.0 6.14e-01 89.6% 87.3%
4952887 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 56.0 6.17e-01 92.5% 89.1%
5033075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 58.0 6.39e-01 97.0% 92.7%
5058671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 57.0 6.17e-01 97.0% 90.9%
3517728 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.79 61.0 6.02e-01 100.0% 77.1%
4992872 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 58.0 6.30e-01 92.5% 94.5%
4946165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 56.0 6.14e-01 97.0% 92.7%
3603357 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 57.0 6.27e-01 97.0% 94.5%
5017214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 55.0 6.05e-01 92.5% 90.9%
5050433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 50.0 5.89e-01 95.5% 100.0%
4994957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 55.0 6.00e-01 91.0% 90.9%
4947995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 56.0 6.05e-01 95.5% 92.7%
4997767 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 50.0 5.80e-01 92.5% 100.0%
5040416 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.82e-01 91.0% 98.0%
5025079 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.85e-01 97.0% 94.5%
4990212 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.63e-01 89.6% 89.1%
5063537 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 53.0 5.59e-01 98.5% 88.3%
5044373 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.74e-01 97.0% 90.0%
2697704 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 54.0 5.51e-01 98.5% 84.6%
3703933 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 61.0 6.21e-01 100.0% 95.4%
3704356 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.09e-01 94.0% 70.0%
4956032 239.1.1.7 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.69 42.0 4.48e-01 98.5% 68.3%
3970459 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 53.0 5.43e-01 97.0% 85.9%
4989217 304.39.1.6 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_2nd 0.69 50.0 5.27e-01 97.0% 86.7%
4975150 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.36e-01 97.0% 90.0%
4964421 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 54.0 5.46e-01 98.5% 87.7%
4959192 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 52.0 5.33e-01 98.5% 86.2%
4932588 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 52.0 5.32e-01 98.5% 86.2%
5060760 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 54.0 5.49e-01 98.5% 89.2%
5034254 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 52.0 5.29e-01 98.5% 86.2%
5036647 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 53.0 5.29e-01 97.0% 81.4%
5058270 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 53.0 5.55e-01 98.5% 95.0%
3839972 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 52.0 5.04e-01 98.5% 74.7%
3995193 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.67 61.0 4.11e-01 100.0% 33.5%
4990359 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 54.0 5.47e-01 98.5% 89.2%
3839083 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 52.0 5.13e-01 98.5% 80.0%
3223930 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.67 58.0 3.89e-01 92.5% 31.7%
5028692 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 53.0 5.37e-01 97.0% 87.7%
3961546 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 54.0 5.48e-01 98.5% 89.2%
5043091 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 53.0 5.30e-01 97.0% 83.8%
4056487 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 52.0 5.12e-01 98.5% 80.0%
5029186 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 51.0 5.25e-01 98.5% 86.2%
4965868 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 51.0 5.22e-01 98.5% 87.3%
3834747 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 51.0 5.10e-01 98.5% 80.0%
4981300 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 51.0 5.23e-01 98.5% 86.2%
4968248 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 51.0 5.08e-01 98.5% 80.0%
4952854 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 52.0 5.35e-01 97.0% 87.7%
5036616 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 53.0 5.29e-01 98.5% 82.9%
3973043 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.22e-01 98.5% 86.2%
4938120 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 52.0 5.17e-01 98.5% 81.4%
3627859 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.66 58.0 5.54e-01 100.0% 84.0%
3719987 219.1.1.19 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C54 0.66 59.0 3.78e-01 100.0% 25.2%
3947085 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 53.0 5.25e-01 97.0% 82.9%
5067372 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 52.0 5.47e-01 98.5% 95.0%
5030430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.22e-01 97.0% 86.2%
4060455 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 51.0 5.05e-01 98.5% 80.0%
4937586 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 51.0 5.25e-01 98.5% 87.7%
4955296 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 51.0 5.19e-01 98.5% 86.2%
4348606 4.1.1.440 beta barrels › SH3 › SH3 › SH3 › PF27165 0.66 51.0 5.25e-01 89.6% 86.2%
5017848 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 52.0 5.13e-01 98.5% 81.4%
5040230 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 51.0 5.25e-01 97.0% 87.7%
3598786 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 58.0 3.76e-01 100.0% 25.9%
5076401 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 50.0 5.00e-01 98.5% 80.0%
3946659 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 51.0 5.23e-01 98.5% 87.7%
4936253 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 51.0 5.09e-01 98.5% 81.4%
4968500 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.65 42.0 4.33e-01 98.5% 69.8%
4940501 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 49.0 5.04e-01 97.0% 84.6%
3961013 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 50.0 4.95e-01 98.5% 80.0%
5075354 4.10.1.0 beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.63 49.0 4.43e-01 83.6% 100.0%
5005032 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 50.0 5.02e-01 97.0% 85.7%
4474739 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.76e-01 85.1% 76.0%
4952498 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 57.0 4.96e-01 100.0% 94.9%
4064452 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.62 48.0 3.86e-01 100.0% 41.4%
3234951 1.1.17.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.62 54.0 3.55e-01 94.0% 34.8%
3964889 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 54.0 5.22e-01 98.5% 88.0%
5055961 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 51.0 4.90e-01 98.5% 81.2%
3273196 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.60 47.0 3.60e-01 94.0% 38.0%
4976896 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 53.0 4.68e-01 98.5% 69.5%
5029643 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 50.0 4.81e-01 98.5% 82.5%
3454284 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 43.0 2.92e-01 88.1% 41.6%
3385474 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.52 46.0 3.44e-01 100.0% 50.9%