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NC_054726.1__YP_010059647.1__KHQ86_gp128__00171

Bact-Vir

NC_054726.1__YP_010059647.1__KHQ86_gp128__00171

Identity

Accession:
NC_054726 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stormageddonvirus› Gordonia_phage_Stormageddon

TaxID: 2656541

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-84
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02467.22 best Whib 47.9 2.20e-12 100.0% 76.9%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uwkB01 3.40.1770.10 Alpha Beta › 3-Layer(aba) Sandwich › Urocanase fold › Urocanase superfamily 0.56 48.0 3.02e-01 100.0% 57.4%
4j8sA00 1.25.40.840 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain 0.55 48.0 3.41e-01 100.0% 61.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959743 1022.2.1.0 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 0.93 79.0 7.64e-01 100.0% 81.5%
2988223 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.92 78.0 6.77e-01 100.0% 62.4%
3027027 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.91 85.0 7.39e-01 100.0% 70.6%
3283617 1022.2.1.0 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 0.76 68.0 6.60e-01 100.0% 90.8%
5026379 2486.1.1.1 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 0.56 48.0 3.24e-01 100.0% 50.0%