←Back to structures

NC_054726.1__YP_010059684.1__KHQ86_gp091__00208

Bact-Vir

NC_054726.1__YP_010059684.1__KHQ86_gp091__00208

Identity

Accession:
NC_054726 ↗
Kingdom:
phage

Quality

73.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stormageddonvirus› Gordonia_phage_Stormageddon

TaxID: 2656541

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.71 39.0 3.51e-01 100.0% 38.7%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 45.0 2.87e-01 100.0% 14.0%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 51.0 4.03e-01 86.4% 68.0%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 46.0 2.92e-01 100.0% 14.2%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 4.78e-01 100.0% 77.9%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.65 51.0 4.04e-01 100.0% 40.2%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.64 54.0 3.92e-01 96.6% 86.9%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.63 44.0 4.06e-01 74.6% 69.2%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 53.0 3.36e-01 94.9% 93.8%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 41.0 3.65e-01 76.3% 46.5%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 41.0 3.92e-01 100.0% 57.7%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.61 51.0 3.87e-01 94.9% 75.3%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.61 51.0 3.86e-01 94.9% 57.6%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 4.14e-01 100.0% 68.3%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.14e-01 100.0% 82.2%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.60 41.0 2.75e-01 71.2% 17.9%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 51.0 3.90e-01 96.6% 68.8%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.59 46.0 4.10e-01 84.7% 72.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.59 46.0 3.51e-01 86.4% 69.3%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.49e-01 100.0% 92.2%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 40.0 2.81e-01 76.3% 32.5%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 43.0 3.71e-01 84.7% 87.0%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 4.09e-01 93.2% 94.4%
1uxbA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.56 47.0 3.36e-01 94.9% 54.3%
4ew7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 48.0 3.94e-01 98.3% 88.5%
3a0rA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 48.0 4.06e-01 100.0% 95.3%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.56 45.0 3.35e-01 96.6% 55.1%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 4.06e-01 100.0% 59.2%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 37.0 3.14e-01 71.2% 67.9%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 45.0 3.62e-01 98.3% 44.6%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 49.0 4.14e-01 98.3% 68.4%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.55 47.0 3.67e-01 98.3% 87.2%
4lrzE02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 42.0 3.60e-01 83.1% 88.3%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 46.0 3.62e-01 98.3% 76.1%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 37.0 3.66e-01 74.6% 63.2%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 46.0 3.77e-01 98.3% 77.2%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 47.0 3.67e-01 100.0% 88.7%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.49e-01 93.2% 47.7%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 41.0 3.56e-01 96.6% 91.5%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 46.0 3.83e-01 98.3% 62.0%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.09e-01 94.9% 39.1%
3li9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 44.0 3.47e-01 100.0% 92.8%
3c8cB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 44.0 3.67e-01 100.0% 94.7%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 45.0 3.95e-01 98.3% 96.7%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 45.0 3.70e-01 100.0% 92.9%
1xi7A00 4.10.40.20 Few Secondary Structures › Irregular › Omega-AgatoxinV › 0.52 36.0 3.86e-01 86.4% 91.5%
8cdaB02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.52 36.0 3.19e-01 74.6% 95.6%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 41.0 3.42e-01 94.9% 97.4%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 43.0 3.21e-01 100.0% 91.7%
3fc7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 41.0 3.60e-01 98.3% 93.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3217097 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.68 58.0 4.51e-01 98.3% 79.3%
6457 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.65 51.0 4.01e-01 100.0% 39.0%
3290541 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.64 45.0 4.40e-01 100.0% 67.7%
3503973 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 54.0 4.17e-01 94.9% 74.6%
5012485 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.62 50.0 4.64e-01 100.0% 69.3%
3600727 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 54.0 3.34e-01 100.0% 88.5%
3167811 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 54.0 4.17e-01 100.0% 43.7%
5067842 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.61 53.0 3.99e-01 96.6% 67.9%
3215886 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 50.0 3.80e-01 94.9% 72.0%
3791593 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 3.96e-01 100.0% 76.7%
3716580 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 54.0 3.99e-01 100.0% 90.0%
3717203 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 54.0 3.72e-01 100.0% 78.5%
3591435 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 53.0 3.93e-01 100.0% 87.7%
3592374 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 53.0 3.37e-01 100.0% 97.3%
3281481 222.1.1.34 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AvrD 0.60 53.0 3.89e-01 100.0% 75.6%
4955365 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.60 51.0 3.94e-01 96.6% 71.9%
3424562 304.107.1.8 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › AAA_assoc 0.59 51.0 3.97e-01 96.6% 76.8%
3969410 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.58 43.0 3.45e-01 81.4% 42.9%
5031715 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 3.89e-01 100.0% 63.7%
3966283 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 49.0 3.79e-01 100.0% 69.3%
4931451 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 42.0 3.49e-01 81.4% 69.1%
3497399 881.4.1.0 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.56 45.0 4.00e-01 88.1% 84.7%
3595541 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 48.0 3.15e-01 100.0% 84.3%
3808055 244.1.1.29 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › AAA_assoc 0.56 48.0 3.80e-01 96.6% 76.7%
4399650 223.1.1.59 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.55 47.0 3.46e-01 100.0% 55.4%
3699929 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 47.0 3.47e-01 100.0% 89.4%
5082716 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 46.0 3.96e-01 96.6% 93.0%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 40.0 3.87e-01 100.0% 69.6%
4997576 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.54 45.0 3.75e-01 96.6% 87.3%
4195296 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 45.0 3.78e-01 96.6% 76.4%
4348163 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 46.0 3.81e-01 98.3% 88.2%
3720034 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 45.0 3.51e-01 100.0% 85.5%
3386304 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.53 46.0 3.36e-01 100.0% 72.4%
3594386 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 45.0 3.85e-01 94.9% 73.7%
5054019 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 45.0 4.28e-01 100.0% 81.4%
5040002 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 43.0 3.56e-01 94.9% 82.6%
5034546 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 44.0 3.73e-01 98.3% 91.4%
2325630 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 43.0 3.60e-01 96.6% 91.0%
4367862 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 43.0 3.68e-01 96.6% 88.6%
4400500 223.1.1.132 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, sCache_3_2 0.52 44.0 2.88e-01 100.0% 37.6%
4973785 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 43.0 3.61e-01 98.3% 83.5%
2576212 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 43.0 3.60e-01 100.0% 92.3%
4994578 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.52 44.0 3.56e-01 100.0% 80.8%
3612153 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 43.0 3.02e-01 100.0% 66.7%
4930498 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 44.0 3.76e-01 96.6% 93.0%
5055900 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 44.0 3.42e-01 98.3% 74.3%
4191473 223.1.1.59 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.52 43.0 3.61e-01 100.0% 79.1%
4541933 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.52 43.0 3.29e-01 100.0% 70.0%
4949048 223.1.1.171 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2 0.52 44.0 3.42e-01 100.0% 87.1%
3978531 223.1.1.58 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.52 44.0 3.32e-01 100.0% 62.6%
4964662 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 42.0 3.41e-01 94.9% 75.8%
4980695 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 42.0 3.54e-01 96.6% 84.5%
4132203 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.51 42.0 3.06e-01 100.0% 55.4%
3356274 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.51 45.0 3.82e-01 98.3% 98.9%
4988027 223.1.1.6 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.51 41.0 2.77e-01 100.0% 48.5%
4973549 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 42.0 3.38e-01 98.3% 75.4%
5019574 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 42.0 3.49e-01 98.3% 81.7%
3477921 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 43.0 3.18e-01 94.9% 59.4%
3589938 223.1.1.59 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.50 43.0 3.16e-01 100.0% 74.1%
4959371 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.50 42.0 3.37e-01 98.3% 76.0%
169734 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.50 41.0 3.60e-01 98.3% 93.0%
4095224 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 41.0 2.77e-01 100.0% 42.9%