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NC_054726.1__YP_010059686.1__KHQ86_gp089__00210
Bact-VirNC_054726.1__YP_010059686.1__KHQ86_gp089__00210
Identity
- Accession:
- NC_054726 ↗
- Kingdom:
- phage
Quality
68.4
mean pLDDT
Taxonomy
TaxID: 2656541
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-92
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.63 | 39.0 | 4.30e-01 | 72.7% | 76.4% |
| 3l2pA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.60 | 37.0 | 4.06e-01 | 70.5% | 76.1% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.56 | 40.0 | 4.20e-01 | 92.0% | 84.4% |
| 3unbF00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 46.0 | 3.43e-01 | 92.0% | 79.1% |
| 5a2fA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 3.77e-01 | 73.9% | 75.5% |
| 1zy9A03 | 2.60.40.2760 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 29.0 | 3.71e-01 | 83.0% | 100.0% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.53 | 42.0 | 4.03e-01 | 87.5% | 84.6% |
| 4y4qA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.53 | 41.0 | 3.37e-01 | 86.4% | 92.5% |
| 4cc9A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 40.0 | 2.83e-01 | 84.1% | 89.3% |
| 1dymA00 | 2.70.100.10 | Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain | 0.52 | 45.0 | 3.00e-01 | 100.0% | 38.0% |
| 2vgnA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.52 | 43.0 | 3.90e-01 | 94.3% | 84.3% |
| 2vugA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.52 | 45.0 | 4.32e-01 | 96.6% | 97.1% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.51 | 39.0 | 3.15e-01 | 92.0% | 41.8% |
| 6udkD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.14e-01 | 72.7% | 69.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4092486 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.69 | 52.0 | 4.10e-01 | 87.5% | 38.9% |
| 4367085 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 35.0 | 3.64e-01 | 86.4% | 56.5% |
| 3730696 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.63 | 31.0 | 2.79e-01 | 79.5% | 33.6% |
| 3226502 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.60 | 46.0 | 3.93e-01 | 81.8% | 69.0% |
| 3235833 | 11.1.5.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box | 0.59 | 41.0 | 3.26e-01 | 73.9% | 61.1% |
| 4059727 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.57 | 50.0 | 4.06e-01 | 98.9% | 51.5% |
| 5001934 | 2004.1.1.554 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter | 0.53 | 40.0 | 2.63e-01 | 83.0% | 21.5% |
| 4975675 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.52 | 41.0 | 3.04e-01 | 85.2% | 91.3% |
| 3787619 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.51 | 36.0 | 3.29e-01 | 72.7% | 73.0% |
| 3553889 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.51 | 39.0 | 3.02e-01 | 92.0% | 36.4% |
| 5081305 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 42.0 | 2.65e-01 | 94.3% | 37.3% |
| 4943251 | 2484.1.1.329 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_3 | 0.50 | 42.0 | 3.70e-01 | 93.2% | 86.7% |
| 4213802 | 3304.1.1.2 ↗ | a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N | 0.50 | 42.0 | 3.60e-01 | 90.9% | 80.0% |