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NC_054727.1__YP_010059691.1__KHQ87_gp002__00002

Bact-Vir

NC_054727.1__YP_010059691.1__KHQ87_gp002__00002

Identity

Accession:
NC_054727 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 308-412_627-658
PDB
D2 medium residues 110-124_702-766
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4idhA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 49.0 3.63e-01 95.0% 94.2%
D3 medium residues 154-166_201-244_286-303
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b70A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.53 37.0 2.87e-01 73.3% 65.9%
3sk2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 41.0 3.40e-01 86.7% 84.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981150 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 41.0 3.59e-01 85.3% 89.9%
3798325 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.51 36.0 2.82e-01 74.7% 51.5%
D4 medium residues 167-178_245-285
PDB
D5 medium residues 415-507
PDB
D6 medium residues 508-626
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14528.12 best LAGLIDADG_3 24.6 3.30e-05 83.2% 70.7%
D7 medium residues 767-780_956-1013
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sjnA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 44.0 3.77e-01 88.9% 96.6%
3iu6A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 42.0 3.46e-01 91.7% 72.0%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.51 34.0 2.87e-01 93.1% 38.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3742402 3654.1.1.0 0.61 33.0 3.58e-01 80.6% 61.7%