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NC_054727.1__YP_010059704.1__KHQ87_gp015__00015
Bact-VirNC_054727.1__YP_010059704.1__KHQ87_gp015__00015
Identity
- Accession:
- NC_054727 ↗
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Taxonomy
TaxID: 2591223
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-76
Domain cluster:
rep: NC_041951.1__YP_009603449.1__FDH68_gp76__00076__D2-59
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dm6S01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.65 | 53.0 | 5.09e-01 | 100.0% | 77.9% |
| 2d3aA01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.63 | 57.0 | 5.12e-01 | 100.0% | 73.3% |
| 6dddH00 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.62 | 51.0 | 4.75e-01 | 100.0% | 72.0% |
| 4lniJ01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.60 | 52.0 | 4.74e-01 | 100.0% | 73.1% |
| 4nfwF00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 54.0 | 4.25e-01 | 100.0% | 52.9% |
| 4fk7A00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.60 | 46.0 | 3.48e-01 | 86.7% | 63.1% |
| 3qsjA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 50.0 | 3.72e-01 | 100.0% | 68.0% |
| 3f6aA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 53.0 | 4.20e-01 | 100.0% | 66.0% |
| 3ng0A01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.58 | 50.0 | 4.60e-01 | 100.0% | 72.8% |
| 5zliA01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.58 | 51.0 | 4.57e-01 | 100.0% | 70.8% |
| 1sjyA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 49.0 | 3.97e-01 | 100.0% | 53.9% |
| 4j80A02 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.54 | 34.0 | 3.57e-01 | 76.0% | 71.2% |
| 4hpqB00 | 2.60.270.60 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 | 0.54 | 49.0 | 4.19e-01 | 100.0% | 67.0% |
| 1v5oA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 47.0 | 4.24e-01 | 100.0% | 72.5% |
| 4oo1I01 | 2.40.50.880 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 31.0 | 3.16e-01 | 100.0% | 58.7% |
| 4dbgA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 46.0 | 4.48e-01 | 100.0% | 90.2% |
| 2qjlA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.52 | 46.0 | 4.25e-01 | 100.0% | 91.9% |
| 2bpsA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 46.0 | 4.53e-01 | 100.0% | 93.8% |
| 1eu3A02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 38.0 | 3.77e-01 | 85.3% | 75.0% |
| 4p16A01 | 3.10.20.540 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Papain-like viral protease, N-terminal domain | 0.50 | 34.0 | 3.84e-01 | 100.0% | 94.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022325 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.67 | 58.0 | 5.25e-01 | 100.0% | 70.0% |
| 3462989 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.66 | 39.0 | 4.03e-01 | 100.0% | 62.9% |
| 4433128 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.63 | 52.0 | 4.83e-01 | 100.0% | 71.6% |
| 4513981 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.63 | 56.0 | 4.80e-01 | 100.0% | 61.7% |
| 3308224 | 239.4.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain | 0.63 | 55.0 | 5.00e-01 | 100.0% | 72.0% |
| 4927129 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.63 | 56.0 | 5.13e-01 | 100.0% | 76.0% |
| 3847997 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.62 | 56.0 | 4.98e-01 | 100.0% | 70.5% |
| 4928255 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.61 | 54.0 | 3.39e-01 | 100.0% | 17.9% |
| 4994326 | 239.4.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain | 0.60 | 52.0 | 4.91e-01 | 100.0% | 81.1% |
| 4230721 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.60 | 53.0 | 4.92e-01 | 100.0% | 78.9% |
| 4873157 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.60 | 51.0 | 4.63e-01 | 100.0% | 69.5% |
| 4995058 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.60 | 50.0 | 4.97e-01 | 98.7% | 87.5% |
| 2391550 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.58 | 50.0 | 4.53e-01 | 100.0% | 70.1% |
| 2557339 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.58 | 51.0 | 4.53e-01 | 100.0% | 69.4% |
| 3944218 | 239.4.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain | 0.56 | 50.0 | 4.42e-01 | 100.0% | 77.3% |
| 3901185 | 221.1.1.120 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2340 | 0.56 | 50.0 | 4.31e-01 | 100.0% | 86.7% |
| 3224683 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.56 | 50.0 | 4.77e-01 | 100.0% | 85.2% |
| 3210219 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 50.0 | 4.40e-01 | 100.0% | 84.5% |
| 3582678 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 49.0 | 4.33e-01 | 100.0% | 91.8% |
| 3627373 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.55 | 49.0 | 4.41e-01 | 100.0% | 87.6% |
| 3457365 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 48.0 | 4.28e-01 | 100.0% | 79.1% |
| 3529672 | 221.1.1.176 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26749 | 0.54 | 48.0 | 4.63e-01 | 100.0% | 94.1% |
| 3333110 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 48.0 | 4.60e-01 | 100.0% | 96.5% |
| 3383363 | 2.1.1.177 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 | 0.53 | 36.0 | 3.42e-01 | 70.7% | 98.9% |
| 3598629 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 46.0 | 4.60e-01 | 100.0% | 94.7% |
| 4950553 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.53 | 48.0 | 4.49e-01 | 100.0% | 94.4% |
| 3227571 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 46.0 | 4.56e-01 | 100.0% | 92.5% |
| 3785086 | 870.1.1.1 ↗ | a+b two layers › Hypothetical protein Yml108w › Hypothetical protein Yml108w › Hypothetical protein Yml108w › DUF1892 | 0.52 | 42.0 | 4.05e-01 | 100.0% | 76.5% |
| 3933476 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.52 | 46.0 | 4.54e-01 | 100.0% | 92.5% |
| 3392429 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 46.0 | 4.03e-01 | 100.0% | 95.7% |
| 5015692 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 46.0 | 4.53e-01 | 100.0% | 96.2% |
| 3487089 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 44.0 | 3.91e-01 | 100.0% | 76.5% |
| 3625578 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.51 | 44.0 | 4.10e-01 | 100.0% | 84.2% |
| 3667393 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.50 | 40.0 | 3.21e-01 | 92.0% | 67.1% |
| 5071546 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.50 | 39.0 | 3.34e-01 | 88.0% | 52.6% |