←Back to structures

NC_054727.1__YP_010059705.1__KHQ87_gp016__00016

Bact-Vir

Identity

Accession:: NC_054727 ↗
Kingdom:: phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phrappuccinovirus› Mycobacterium_phage_Phrappuccino

TaxID: 2591223

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-116

PDB

Domain cluster: rep: MW980061.1__QXV73538.1__X__00004__D11-113

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hstB02	2.30.120.10	Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region	0.64	27.0	3.35e-01	94.5%	60.3%
3njaA02	2.10.70.100	Mainly Beta › Ribbon › Complement Module; domain 1 ›	0.60	26.0	3.70e-01	85.3%	91.3%
1fuiA03	3.20.14.10	Alpha Beta › Alpha-Beta Barrel › L-fucose Isomerase; Chain A, domain 3 › L-fucose/L-arabinose isomerase, C-terminal	0.56	44.0	3.42e-01	86.2%	49.8%
4z48A00	2.50.20.10	Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX	0.55	39.0	3.06e-01	74.3%	91.7%
6ghmC02	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.53	29.0	3.65e-01	91.7%	90.6%
3rd4B00	2.40.50.660	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.53	35.0	3.96e-01	100.0%	90.2%
6e55A01	2.30.30.90	Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA)	0.52	34.0	4.02e-01	99.1%	100.0%
2ebfX01	3.10.670.10	Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei.	0.52	39.0	3.22e-01	89.9%	45.1%
5aj3E01	3.30.230.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 ›	0.51	29.0	3.32e-01	97.2%	74.1%
6i7sG01	2.30.230.10	Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A	0.51	36.0	2.74e-01	72.5%	97.7%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3855974	4.1.1.253 ↗	beta barrels › SH3 › SH3 › SH3 › DUF4537	0.64	39.0	4.50e-01	73.4%	88.0%
3559960	2006.1.6.66 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537	0.62	35.0	4.18e-01	97.2%	84.3%
3362248	632.3.1.20 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › PF28698	0.57	27.0	3.73e-01	87.2%	94.0%
1086995	5084.5.1.4 ↗	beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD	0.57	27.0	3.74e-01	87.2%	94.2%
5042035	512.1.1.2 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd	0.57	36.0	2.86e-01	100.0%	32.1%
4969773	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.53	38.0	3.56e-01	84.4%	58.6%
3505589	4.1.1.287 ↗	beta barrels › SH3 › SH3 › SH3 › DUF5641	0.53	29.0	2.87e-01	88.1%	45.8%
3597134	1.1.17.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2	0.53	41.0	3.00e-01	81.7%	90.8%
3282536	330.4.1.1 ↗	a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC	0.52	33.0	3.69e-01	100.0%	85.0%
3810562	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	31.0	3.53e-01	91.7%	82.7%
3445028	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.52	32.0	3.59e-01	98.2%	82.5%
4979052	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.51	36.0	3.90e-01	96.3%	88.9%

D2 high residues 120-254

PDB

Domain cluster: rep: NC_054723.1__YP_010058984.1__KHQ83_gp081__00195__D4-121