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NC_054727.1__YP_010059726.1__KHQ87_gp037__00037
Bact-VirNC_054727.1__YP_010059726.1__KHQ87_gp037__00037
Identity
- Accession:
- NC_054727 ↗
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Taxonomy
TaxID: 2591223
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 77-129
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.79 | 70.0 | 5.66e-01 | 100.0% | 65.7% |
| 2l35A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.78 | 68.0 | 6.45e-01 | 100.0% | 88.9% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 62.0 | 6.36e-01 | 90.6% | 100.0% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.75 | 63.0 | 4.85e-01 | 100.0% | 42.1% |
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 63.0 | 6.20e-01 | 100.0% | 98.3% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.74 | 50.0 | 4.83e-01 | 98.1% | 61.3% |
| 4q5qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.74 | 64.0 | 5.16e-01 | 100.0% | 55.2% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 63.0 | 5.09e-01 | 100.0% | 53.3% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.72 | 59.0 | 5.32e-01 | 96.2% | 68.8% |
| 4rm7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 61.0 | 4.54e-01 | 100.0% | 37.4% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 61.0 | 5.68e-01 | 100.0% | 85.3% |
| 3gfaA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.71 | 55.0 | 3.72e-01 | 96.2% | 23.0% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 58.0 | 4.69e-01 | 98.1% | 59.8% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 54.0 | 5.58e-01 | 98.1% | 100.0% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 58.0 | 5.60e-01 | 100.0% | 88.7% |
| 1y74A00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.68 | 52.0 | 5.16e-01 | 100.0% | 80.7% |
| 3ilxA02 | 1.10.287.2170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 48.0 | 5.05e-01 | 86.8% | 93.2% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.67 | 43.0 | 4.40e-01 | 71.7% | 67.3% |
| 4ofzA01 | 1.20.58.1800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 53.0 | 4.30e-01 | 100.0% | 44.2% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 47.0 | 3.81e-01 | 75.5% | 44.7% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 55.0 | 4.77e-01 | 100.0% | 59.3% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 55.0 | 4.33e-01 | 100.0% | 44.4% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 52.0 | 3.42e-01 | 88.7% | 21.2% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 45.0 | 4.38e-01 | 98.1% | 63.5% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.63 | 48.0 | 4.16e-01 | 94.3% | 50.0% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 53.0 | 5.00e-01 | 100.0% | 80.0% |
| 2xppA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.63 | 50.0 | 3.86e-01 | 98.1% | 37.2% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.61 | 50.0 | 3.21e-01 | 100.0% | 70.4% |
| 2b3yA01 | 3.30.499.10 | Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 | 0.60 | 50.0 | 3.32e-01 | 96.2% | 37.2% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 48.0 | 3.60e-01 | 90.6% | 61.6% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.60 | 44.0 | 4.15e-01 | 81.1% | 83.3% |
| 7z7vE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.59 | 41.0 | 4.04e-01 | 77.4% | 66.7% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.59 | 46.0 | 3.00e-01 | 94.3% | 39.5% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.59 | 44.0 | 4.34e-01 | 92.5% | 77.6% |
| 2qbyB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 36.0 | 2.94e-01 | 88.7% | 30.4% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.56 | 43.0 | 3.80e-01 | 90.6% | 54.0% |
| 1ifwA00 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.56 | 42.0 | 3.66e-01 | 86.8% | 50.0% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.55 | 45.0 | 3.02e-01 | 100.0% | 32.7% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 42.0 | 4.00e-01 | 90.6% | 75.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3962282 | 3419.1.1.2 ↗ | alpha bundles › Antitoxin VbhA › Antitoxin VbhA › Antitoxin VbhA › VbhA | 0.80 | 59.0 | 5.83e-01 | 79.2% | 76.4% |
| 3697800 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.79 | 69.0 | 5.41e-01 | 100.0% | 48.7% |
| 3221437 | 109.4.1.957 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TTI1_N | 0.79 | 65.0 | 3.94e-01 | 98.1% | 13.8% |
| 3828011 | 109.4.1.1271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 | 0.79 | 67.0 | 4.48e-01 | 92.5% | 42.2% |
| 5077460 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 67.0 | 6.22e-01 | 100.0% | 77.9% |
| 3287986 | 605.8.1.7 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › DUF6374 | 0.76 | 62.0 | 6.39e-01 | 98.1% | 100.0% |
| 3670388 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 61.0 | 4.60e-01 | 94.3% | 37.0% |
| 3204414 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.75 | 60.0 | 3.65e-01 | 100.0% | 13.1% |
| 4038778 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.72 | 61.0 | 4.84e-01 | 100.0% | 46.1% |
| 4618805 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.72 | 60.0 | 5.98e-01 | 100.0% | 94.5% |
| 3568826 | 5020.1.1.13 ↗ | extended segments › Subunit VIII of photosystem I reaction centre, PsaI › Subunit VIII of photosystem I reaction centre, PsaI › Subunit VIII of photosystem I reaction centre, PsaI › TMEM219 | 0.71 | 62.0 | 5.82e-01 | 100.0% | 87.7% |
| 4453306 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.71 | 57.0 | 4.45e-01 | 92.5% | 41.2% |
| 3587855 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.71 | 58.0 | 5.98e-01 | 96.2% | 100.0% |
| 3608317 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.71 | 55.0 | 4.81e-01 | 88.7% | 56.2% |
| 4932178 | 3883.1.1.0 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain | 0.70 | 56.0 | 4.00e-01 | 96.2% | 29.4% |
| 3961296 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.70 | 58.0 | 4.96e-01 | 100.0% | 95.7% |
| 3598977 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.69 | 56.0 | 4.81e-01 | 96.2% | 56.5% |
| 3428029 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.69 | 56.0 | 4.71e-01 | 96.2% | 52.0% |
| 3583102 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 52.0 | 4.65e-01 | 88.7% | 57.5% |
| 3625492 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.68 | 55.0 | 4.09e-01 | 92.5% | 34.5% |
| 4018255 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.68 | 57.0 | 3.30e-01 | 98.1% | 9.5% |
| 5059135 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.67 | 50.0 | 4.69e-01 | 90.6% | 65.7% |
| 4000709 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.65 | 48.0 | 4.47e-01 | 81.1% | 80.0% |
| 3295653 | 4268.2.1.0 ↗ | alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA | 0.62 | 53.0 | 4.16e-01 | 100.0% | 45.8% |
| 4988046 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 44.0 | 4.58e-01 | 79.2% | 84.0% |
| 3993361 | 622.4.1.41 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DUF7753 | 0.61 | 46.0 | 4.34e-01 | 83.0% | 67.7% |