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NC_054727.1__YP_010059752.1__KHQ87_gp063__00063

Bact-Vir

NC_054727.1__YP_010059752.1__KHQ87_gp063__00063

Identity

Accession:
NC_054727 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phrappuccinovirus› Mycobacterium_phage_Phrappuccino

TaxID: 2591223

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-52
PDB
Domain cluster: rep: aot2015-SM37_SRR1761715_Peru_trim_clean_trim_clean_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00241__D11-53
D2 high residues 180-275
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.77 64.0 6.67e-01 100.0% 95.5%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.75 61.0 6.48e-01 96.9% 100.0%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.74 65.0 6.60e-01 100.0% 98.9%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.73 63.0 6.43e-01 97.9% 96.7%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 64.0 6.14e-01 100.0% 87.2%
6syyA01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.58 47.0 4.17e-01 88.5% 74.6%
2uxtA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.54 49.0 4.11e-01 99.0% 87.0%
2p0oA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 38.0 2.93e-01 78.1% 41.5%
3vkhB09 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 3.31e-01 84.4% 66.7%
1gskA01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 45.0 3.76e-01 96.9% 76.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.77 64.0 6.74e-01 100.0% 98.9%
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.76 66.0 6.71e-01 100.0% 95.7%
185692 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.70 64.0 6.14e-01 100.0% 87.2%
4063416 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 47.0 4.22e-01 75.0% 72.3%
3830608 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.61 54.0 3.97e-01 100.0% 62.5%
4663567 207.6.1.12 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Ice_nucleation 0.58 45.0 2.80e-01 100.0% 13.4%
4383530 2.1.1.101 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › KfrB 0.56 37.0 3.99e-01 90.6% 81.2%
4824961 1033.1.1.1 ↗ beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore 0.53 47.0 3.87e-01 100.0% 58.4%
4528705 2008.1.1.182 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26351 0.51 39.0 3.37e-01 83.3% 83.1%
3920456 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.66e-01 88.5% 69.6%