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NC_054727.1__YP_010059758.1__KHQ87_gp069__00069

Bact-Vir

NC_054727.1__YP_010059758.1__KHQ87_gp069__00069

Identity

Accession:
NC_054727 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-39_76-184
PDB
D2 high residues 215-307
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.69 45.0 4.81e-01 100.0% 77.2%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.68 41.0 4.74e-01 71.0% 87.5%
1whoA00 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.60 42.0 4.24e-01 100.0% 72.3%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 53.0 4.54e-01 100.0% 64.9%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.58 51.0 4.49e-01 100.0% 64.5%
3fn9C04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 4.05e-01 100.0% 72.8%
4b6zA01 2.60.40.3120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 4.33e-01 100.0% 71.7%
4gaaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.57 47.0 3.74e-01 100.0% 43.5%
7y6oA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 4.39e-01 100.0% 83.1%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 41.0 3.79e-01 100.0% 56.8%
5l56A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 4.13e-01 100.0% 79.8%
3wnkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 51.0 4.58e-01 100.0% 72.8%
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.56 39.0 3.85e-01 72.0% 90.8%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 49.0 4.85e-01 94.6% 94.9%
3fcsA03 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.56 46.0 4.08e-01 100.0% 61.9%
4zrxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 41.0 4.01e-01 100.0% 71.4%
3cu7A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.55 37.0 3.56e-01 71.0% 92.2%
3mlpA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.79e-01 92.5% 58.8%
1f0lA03 2.60.40.700 Mainly Beta › Sandwich › Immunoglobulin-like › Diphtheria toxin, receptor-binding domain 0.55 46.0 3.91e-01 100.0% 56.5%
3ejjX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 4.30e-01 100.0% 83.2%
2hyxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 41.0 3.67e-01 100.0% 58.0%
7nitA06 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 48.0 3.93e-01 100.0% 75.0%
4e8dA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 39.0 3.49e-01 100.0% 52.9%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 49.0 4.84e-01 98.9% 95.9%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.53 42.0 4.14e-01 100.0% 78.8%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 48.0 4.35e-01 100.0% 75.4%
7plsA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 45.0 4.60e-01 100.0% 94.6%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 42.0 3.98e-01 100.0% 72.1%
3oq3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.98e-01 100.0% 75.0%
3eo6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 39.0 3.83e-01 100.0% 71.7%
4cuaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 45.0 3.72e-01 100.0% 78.7%
4kc3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.66e-01 100.0% 72.6%
3d3aA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 40.0 3.58e-01 96.8% 60.4%
3lwcA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 38.0 3.70e-01 100.0% 73.8%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934579 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.76 54.0 4.68e-01 100.0% 49.3%
5012660 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.74 52.0 4.56e-01 100.0% 49.3%
4937135 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.68 50.0 4.11e-01 100.0% 42.4%
3649226 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.68 48.0 3.08e-01 72.0% 26.3%
5043829 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.68 52.0 4.41e-01 100.0% 49.7%
5021187 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 43.0 4.85e-01 100.0% 88.6%
3280299 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 44.0 4.68e-01 100.0% 78.8%
4958191 12.2.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain 0.66 45.0 4.10e-01 100.0% 52.4%
5009887 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 43.0 3.94e-01 100.0% 49.6%
5036977 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.65 50.0 4.06e-01 100.0% 42.8%
5014754 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.65 42.0 4.64e-01 100.0% 85.7%
4948545 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.65 52.0 4.08e-01 100.0% 42.1%
4929682 12.2.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain 0.64 49.0 4.76e-01 100.0% 71.4%
5035195 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.64 54.0 4.65e-01 100.0% 58.6%
3281166 10.20.1.0 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.64 44.0 4.14e-01 71.0% 63.5%
5056882 4081.1.1.12 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 0.64 50.0 3.90e-01 100.0% 38.5%
5009896 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 42.0 3.87e-01 100.0% 50.8%
5044775 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 46.0 4.45e-01 100.0% 67.6%
3563675 12.1.1.25 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C 0.63 48.0 4.85e-01 100.0% 80.0%
3186198 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 52.0 4.70e-01 100.0% 66.4%
3268381 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 42.0 4.20e-01 100.0% 67.4%
3684935 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 45.0 4.17e-01 100.0% 59.2%
3632354 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 45.0 4.57e-01 100.0% 77.8%
3201540 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 45.0 3.54e-01 100.0% 37.4%
1587736 12.6.1.6 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_95_C 0.61 43.0 4.05e-01 100.0% 58.0%
4954927 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.61 49.0 4.13e-01 100.0% 51.6%
3769453 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 47.0 4.79e-01 100.0% 83.3%
5038999 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.61 49.0 3.83e-01 100.0% 40.5%
3964117 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.61 51.0 5.11e-01 100.0% 88.4%
3863886 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.61 46.0 4.60e-01 100.0% 77.9%
4943488 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 52.0 4.44e-01 100.0% 59.3%
4855483 4081.1.1.9 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M61_N 0.60 50.0 4.09e-01 100.0% 49.4%
4929043 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 45.0 4.30e-01 100.0% 69.1%
4360808 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 48.0 4.72e-01 100.0% 80.6%
3742764 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.59 47.0 3.68e-01 100.0% 39.0%
3247246 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 43.0 4.21e-01 100.0% 73.0%
3882924 12.5.1.6 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FIIND 0.58 47.0 4.12e-01 98.9% 58.6%
5045152 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 52.0 4.69e-01 100.0% 75.2%
3348395 10.2.1.55 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.57 39.0 3.81e-01 71.0% 93.3%
3466694 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 49.0 4.29e-01 100.0% 62.9%
3258281 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 3.77e-01 71.0% 63.6%
2491354 4182.1.1.3 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.57 46.0 4.57e-01 100.0% 85.4%
3228364 2006.1.6.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 0.56 49.0 3.24e-01 100.0% 68.1%
3239826 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.56 50.0 3.82e-01 100.0% 46.8%
4932638 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 45.0 3.94e-01 100.0% 58.6%
3989724 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 47.0 4.30e-01 100.0% 70.8%
4992085 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 46.0 4.66e-01 96.8% 92.2%
5007537 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 38.0 3.79e-01 100.0% 70.5%
4880247 11.1.5.10 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Diphtheria_R 0.54 46.0 3.93e-01 100.0% 57.1%
5056887 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.54 45.0 4.14e-01 100.0% 70.0%
3172237 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.54 48.0 3.68e-01 100.0% 44.1%
4365768 10.32.1.56 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CE2_N 0.54 42.0 3.92e-01 100.0% 66.7%
3778666 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.53 40.0 3.86e-01 82.8% 70.5%
1942248 11.1.1.353 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TarS_C2 0.53 41.0 4.38e-01 100.0% 97.5%
3713554 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.53 47.0 3.65e-01 100.0% 56.1%
4943875 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.70e-01 100.0% 57.2%
3989692 4081.1.1.12 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 0.53 47.0 3.63e-01 100.0% 76.7%
4326361 12.3.1.8 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.52 46.0 3.28e-01 100.0% 39.0%
3452453 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 46.0 3.88e-01 100.0% 83.7%
3862710 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.62e-01 100.0% 60.8%
3188281 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 44.0 3.87e-01 100.0% 86.4%