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NC_054727.1__YP_010059811.1__KHQ87_gp122__00122
Bact-VirNC_054727.1__YP_010059811.1__KHQ87_gp122__00122
Identity
- Accession:
- NC_054727 ↗
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Taxonomy
TaxID: 2591223
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-42
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kw3B01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.67 | 51.0 | 3.61e-01 | 100.0% | 27.3% |
| 4uopA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 39.0 | 3.02e-01 | 73.8% | 26.9% |
| 4pqxA01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.62 | 42.0 | 3.56e-01 | 100.0% | 41.1% |
| 4ry2A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.59 | 44.0 | 3.21e-01 | 88.1% | 68.1% |
| 7k7jA02 | 2.60.40.1770 | Mainly Beta › Sandwich › Immunoglobulin-like › ephrin a2 ectodomain | 0.58 | 41.0 | 3.66e-01 | 76.2% | 56.5% |
| 2awnC02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 42.0 | 3.60e-01 | 100.0% | 44.9% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.57 | 45.0 | 3.51e-01 | 97.6% | 46.4% |
| 1l9aA00 | 3.30.56.30 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit | 0.57 | 47.0 | 3.81e-01 | 97.6% | 58.6% |
| 5w2fA01 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.56 | 43.0 | 3.54e-01 | 95.2% | 43.0% |
| 3ct8A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 45.0 | 3.30e-01 | 100.0% | 32.3% |
| 1xdpA02 | 3.30.1840.10 | Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain | 0.55 | 38.0 | 2.51e-01 | 88.1% | 15.3% |
| 2hzgB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 39.0 | 2.74e-01 | 76.2% | 27.3% |
| 4mb4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 48.0 | 3.92e-01 | 100.0% | 82.3% |
| 2heqA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 40.0 | 3.83e-01 | 100.0% | 66.7% |
| 2pqqA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 41.0 | 2.95e-01 | 88.1% | 70.7% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.54 | 42.0 | 2.82e-01 | 85.7% | 89.6% |
| 4dkjA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 42.0 | 2.63e-01 | 97.6% | 21.3% |
| 6pfzD02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 2.81e-01 | 100.0% | 23.0% |
| 5ih0A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 43.0 | 3.42e-01 | 100.0% | 41.9% |
| 4xqkA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 41.0 | 2.87e-01 | 85.7% | 25.0% |
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 40.0 | 2.76e-01 | 88.1% | 26.3% |
| 3owrA00 | 2.60.40.4120 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 47.0 | 3.30e-01 | 97.6% | 90.6% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.54 | 43.0 | 3.36e-01 | 97.6% | 44.4% |
| 6wxrA01 | 1.10.640.10 | Mainly Alpha › Orthogonal Bundle › Myeloperoxidase, subunit C › Haem peroxidase domain superfamily, animal type | 0.54 | 36.0 | 2.09e-01 | 71.4% | 47.7% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 43.0 | 3.36e-01 | 97.6% | 77.5% |
| 3sjnA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 39.0 | 2.85e-01 | 78.6% | 34.5% |
| 5h5oA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 39.0 | 2.96e-01 | 88.1% | 75.2% |
| 2b5uA03 | 3.10.380.10 | Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain | 0.52 | 41.0 | 3.38e-01 | 100.0% | 45.9% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 37.0 | 2.85e-01 | 71.4% | 40.6% |
| 4d7sA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 41.0 | 2.94e-01 | 90.5% | 38.5% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 44.0 | 3.09e-01 | 100.0% | 95.1% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 41.0 | 3.69e-01 | 100.0% | 81.7% |
| 1qu6A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 40.0 | 3.53e-01 | 100.0% | 71.1% |
| 3fx3B01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 37.0 | 2.81e-01 | 90.5% | 75.0% |
| 4fvmA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 3.18e-01 | 97.6% | 64.1% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.50 | 41.0 | 2.79e-01 | 100.0% | 31.4% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 39.0 | 3.49e-01 | 95.2% | 59.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3879359 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.66 | 56.0 | 3.14e-01 | 100.0% | 48.7% |
| 5000381 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.64 | 54.0 | 3.83e-01 | 95.2% | 32.8% |
| 4101910 | 376.1.3.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N | 0.63 | 52.0 | 3.72e-01 | 100.0% | 33.1% |
| 3786336 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.62 | 52.0 | 3.44e-01 | 92.9% | 32.7% |
| 4928280 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.62 | 48.0 | 3.08e-01 | 100.0% | 47.8% |
| 3264431 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 45.0 | 3.50e-01 | 78.6% | 61.1% |
| 4012853 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.61 | 49.0 | 3.24e-01 | 97.6% | 57.5% |
| 4888970 | 316.1.1.58 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4, Nrap_D5 | 0.61 | 50.0 | 3.28e-01 | 100.0% | 22.1% |
| 3734828 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.61 | 48.0 | 2.93e-01 | 97.6% | 62.8% |
| 3877924 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.61 | 52.0 | 4.20e-01 | 100.0% | 60.0% |
| 3205743 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.61 | 54.0 | 3.85e-01 | 100.0% | 42.5% |
| None | — | 0.60 | 50.0 | 3.54e-01 | 100.0% | 32.7% | |
| 1117795 | 316.1.1.25 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 | 0.60 | 49.0 | 3.23e-01 | 100.0% | 22.2% |
| 3575305 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.60 | 43.0 | 2.57e-01 | 78.6% | 14.0% |
| 3937549 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 42.0 | 3.24e-01 | 78.6% | 30.0% |
| 3681066 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.60 | 43.0 | 2.72e-01 | 92.9% | 13.9% |
| 3782244 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.59 | 49.0 | 3.85e-01 | 100.0% | 47.0% |
| 5070441 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 39.0 | 3.36e-01 | 100.0% | 41.4% |
| 3632528 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.59 | 40.0 | 3.72e-01 | 73.8% | 56.7% |
| 3969871 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.59 | 40.0 | 3.27e-01 | 73.8% | 75.3% |
| 3189510 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 46.0 | 4.21e-01 | 95.2% | 66.7% |
| 5060388 | 101.1.9.2 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 | 0.58 | 46.0 | 3.46e-01 | 92.9% | 46.1% |
| 3516105 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.58 | 47.0 | 3.46e-01 | 100.0% | 40.7% |
| 3201485 | 2003.1.2.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI | 0.58 | 48.0 | 2.73e-01 | 100.0% | 54.2% |
| 5030700 | 101.1.9.2 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 | 0.58 | 46.0 | 3.73e-01 | 92.9% | 73.0% |
| 3647577 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.58 | 49.0 | 3.01e-01 | 100.0% | 15.2% |
| 4927009 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.58 | 47.0 | 3.38e-01 | 100.0% | 91.4% |
| 4011050 | 2003.1.2.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 | 0.58 | 46.0 | 3.13e-01 | 100.0% | 43.1% |
| 4958140 | 3504.2.1.1 ↗ | beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco | 0.57 | 48.0 | 3.47e-01 | 100.0% | 72.3% |
| 3502941 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 49.0 | 4.14e-01 | 100.0% | 60.0% |
| 3363746 | 2003.1.5.165 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11, Methyltransf_23 | 0.57 | 44.0 | 2.74e-01 | 88.1% | 40.8% |
| 3258882 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.56 | 45.0 | 3.07e-01 | 95.2% | 80.6% |
| 3216163 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 47.0 | 3.69e-01 | 100.0% | 58.9% |
| 3214509 | 2006.1.6.39 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb | 0.56 | 43.0 | 2.67e-01 | 88.1% | 16.2% |
| 4956700 | 101.1.9.2 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 | 0.55 | 42.0 | 3.37e-01 | 92.9% | 43.4% |
| 4948449 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.55 | 42.0 | 3.86e-01 | 95.2% | 69.8% |
| 4966291 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.55 | 44.0 | 3.28e-01 | 100.0% | 32.8% |
| 4968397 | 2.6.1.8 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › N6_N4_Mtase | 0.55 | 43.0 | 2.55e-01 | 100.0% | 9.6% |
| 4986411 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.54 | 42.0 | 2.78e-01 | 88.1% | 36.9% |
| 5069938 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.54 | 44.0 | 3.44e-01 | 100.0% | 40.0% |
| 3972842 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.53 | 43.0 | 3.17e-01 | 100.0% | 33.8% |
| 3672911 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.52 | 42.0 | 2.80e-01 | 97.6% | 84.5% |
| 5046617 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 42.0 | 2.88e-01 | 100.0% | 24.6% |
| 3277210 | 388.1.1.0 ↗ | few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like | 0.51 | 35.0 | 3.64e-01 | 83.3% | 100.0% |
| 3968675 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 37.0 | 2.91e-01 | 100.0% | 55.4% |
| 3512301 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 37.0 | 2.26e-01 | 88.1% | 11.2% |