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NC_054727.1__YP_010059817.1__KHQ87_gp128__00128

Bact-Vir

NC_054727.1__YP_010059817.1__KHQ87_gp128__00128

Identity

Accession:
NC_054727 ↗
Kingdom:
phage

Quality

70.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-37
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xuvB00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.67 51.0 4.08e-01 85.7% 74.6%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.66 52.0 3.39e-01 97.1% 19.1%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3315337 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.73 63.0 3.82e-01 97.1% 15.7%
3395965 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.71 57.0 5.13e-01 100.0% 92.7%
4029168 4984.1.1.0 alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain 0.70 61.0 4.15e-01 100.0% 26.9%
3779306 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 51.0 4.37e-01 80.0% 56.7%
3994267 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.68 57.0 3.32e-01 100.0% 20.9%
3719003 5001.1.1.53 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › LMBR1 0.67 55.0 3.23e-01 100.0% 53.3%