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NC_054727.1__YP_010059846.1__KHQ87_gp157__00157

Bact-Vir

NC_054727.1__YP_010059846.1__KHQ87_gp157__00157

Identity

Accession:
NC_054727 ↗
Kingdom:
phage

Quality

72.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phrappuccinovirus› Mycobacterium_phage_Phrappuccino

TaxID: 2591223

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-85
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.58 51.0 3.71e-01 100.0% 58.1%
1qr0A01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.56 39.0 3.44e-01 74.1% 88.0%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.55 40.0 4.11e-01 77.8% 100.0%
2y1rK00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 4.08e-01 82.7% 83.7%
3otdA00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.55 47.0 3.44e-01 100.0% 60.0%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 4.06e-01 82.7% 85.6%
1d1jB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 39.0 3.29e-01 76.5% 83.8%
4g08A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 28.0 2.94e-01 91.4% 54.3%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 39.0 3.17e-01 82.7% 58.2%
2r4fA03 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.51 38.0 3.49e-01 82.7% 97.4%
3rpwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 43.0 3.43e-01 100.0% 67.6%
2hjiA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 38.0 3.12e-01 82.7% 91.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4022495 312.1.1.7 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › ATP_transf 0.68 48.0 3.79e-01 74.1% 62.4%
3188246 312.1.1.7 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › ATP_transf 0.67 48.0 3.95e-01 74.1% 60.7%
3227960 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.63 48.0 4.43e-01 81.5% 70.5%
5056019 886.1.1.5 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Bact_hydrolase 0.61 48.0 4.06e-01 85.2% 88.6%
3243502 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.60 39.0 4.33e-01 81.5% 90.0%
3936229 207.1.1.156 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.59 40.0 2.60e-01 75.3% 15.0%
4667955 304.150.1.0 ↗ a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain 0.59 46.0 4.33e-01 82.7% 85.3%
4212253 304.150.1.1 ↗ a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.58 45.0 4.35e-01 82.7% 86.0%
4032691 304.150.1.1 ↗ a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.58 45.0 4.30e-01 82.7% 85.3%
4245789 304.150.1.1 ↗ a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.57 44.0 4.28e-01 82.7% 87.8%
4552838 304.150.1.1 ↗ a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.55 44.0 4.17e-01 82.7% 87.1%
4054258 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.55 39.0 3.33e-01 75.3% 57.9%
3308738 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 38.0 3.17e-01 72.8% 55.2%
4944013 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 41.0 3.46e-01 87.7% 78.1%
3926328 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 39.0 3.93e-01 85.2% 91.8%
3180053 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.51 44.0 3.16e-01 98.8% 76.1%
4536686 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.51 35.0 3.54e-01 71.6% 96.2%