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NC_054776.1__YP_010060828.1__KIP50_gp59__00031

Bact-Vir

NC_054776.1__YP_010060828.1__KIP50_gp59__00031

Identity

Accession:
NC_054776 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-55
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.85 78.0 6.84e-01 100.0% 78.9%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.85 77.0 6.55e-01 100.0% 82.3%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.84 77.0 6.75e-01 100.0% 81.7%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.83 75.0 6.73e-01 100.0% 79.4%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.82 74.0 6.44e-01 100.0% 78.7%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 73.0 6.32e-01 100.0% 76.0%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.80 72.0 5.58e-01 100.0% 57.1%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 58.0 5.89e-01 92.0% 79.6%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 57.0 5.84e-01 84.0% 81.2%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 70.0 6.39e-01 100.0% 83.1%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 68.0 6.12e-01 98.0% 82.4%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 5.95e-01 86.0% 90.7%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 5.73e-01 94.0% 81.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.69 50.0 4.62e-01 86.0% 59.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 4.93e-01 84.0% 76.4%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.94e-01 84.0% 75.0%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.65 46.0 4.88e-01 88.0% 88.4%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 43.0 3.24e-01 70.0% 62.8%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.92e-01 86.0% 85.1%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 52.0 3.64e-01 100.0% 28.6%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.64 49.0 4.01e-01 94.0% 42.6%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.58e-01 82.0% 70.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 4.70e-01 94.0% 86.4%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.75e-01 100.0% 73.0%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 4.51e-01 100.0% 62.8%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 3.73e-01 94.0% 44.0%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 3.71e-01 94.0% 91.6%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.59 48.0 3.37e-01 100.0% 27.1%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 3.46e-01 92.0% 73.4%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.53e-01 100.0% 81.4%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 3.72e-01 100.0% 87.2%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.57 48.0 3.12e-01 100.0% 88.6%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.03e-01 98.0% 43.9%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 38.0 3.06e-01 72.0% 75.2%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.55 32.0 3.40e-01 88.0% 61.0%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 42.0 3.14e-01 94.0% 32.1%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 38.0 4.21e-01 94.0% 97.4%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.37e-01 100.0% 85.8%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 44.0 3.23e-01 94.0% 37.4%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.27e-01 100.0% 37.4%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.26e-01 94.0% 93.4%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.84e-01 100.0% 82.4%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.09e-01 94.0% 33.3%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.23e-01 100.0% 38.7%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.51 42.0 3.37e-01 92.0% 50.5%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 2.89e-01 92.0% 100.0%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 40.0 3.65e-01 100.0% 63.9%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.27e-01 100.0% 68.5%
2nr4A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.20e-01 100.0% 88.7%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.50 40.0 3.08e-01 100.0% 92.1%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027750 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 62.0 5.99e-01 80.0% 69.1%
3712219 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.86 78.0 7.03e-01 98.0% 75.4%
4932286 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.85 77.0 6.72e-01 100.0% 80.8%
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 75.0 6.89e-01 100.0% 79.7%
4985100 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 64.0 6.41e-01 88.0% 82.0%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 69.0 6.38e-01 92.0% 81.0%
5003618 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.81 59.0 6.24e-01 84.0% 86.7%
4982561 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.81 58.0 6.09e-01 84.0% 84.4%
4139090 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.80 61.0 5.95e-01 92.0% 74.5%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.80 61.0 5.95e-01 92.0% 74.5%
4963111 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.80 59.0 6.16e-01 86.0% 86.7%
4957377 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.80 60.0 5.60e-01 92.0% 65.1%
5035177 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.79 59.0 5.78e-01 86.0% 74.1%
4951012 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.79 62.0 6.28e-01 96.0% 86.0%
5063311 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.78 56.0 5.83e-01 82.0% 84.4%
3971321 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.77 68.0 6.11e-01 100.0% 76.8%
4026431 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 66.0 6.09e-01 100.0% 76.9%
4016022 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 65.0 5.67e-01 96.0% 72.0%
3258610 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 68.0 5.77e-01 100.0% 70.0%
145704 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.76 63.0 6.02e-01 98.0% 79.3%
4953223 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.75 56.0 5.70e-01 86.0% 82.0%
5058457 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.75 68.0 6.20e-01 100.0% 76.9%
3621818 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.75 58.0 5.83e-01 90.0% 84.0%
3308604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 62.0 5.47e-01 100.0% 62.7%
3993250 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.74 59.0 5.78e-01 98.0% 80.0%
5038405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 53.0 5.50e-01 90.0% 84.4%
1068760 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.73 58.0 4.98e-01 94.0% 55.1%
4139778 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 63.0 5.66e-01 100.0% 69.9%
4024411 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 49.0 4.78e-01 84.0% 63.6%
3256431 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.73 58.0 4.98e-01 96.0% 55.0%
3989485 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.72 53.0 5.38e-01 86.0% 80.0%
4044269 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.71 62.0 5.60e-01 100.0% 71.4%
4218142 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.70 55.0 4.41e-01 94.0% 43.0%
1263713 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.70 55.0 5.47e-01 94.0% 82.7%
3243143 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.30e-01 100.0% 70.8%
4929875 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 58.0 4.62e-01 96.0% 47.0%
3304602 4.1.1.427 beta barrels › SH3 › SH3 › SH3 › F-box 0.68 54.0 4.38e-01 100.0% 46.3%
3231177 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.67 53.0 5.39e-01 100.0% 88.0%
3920026 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.67 53.0 3.54e-01 96.0% 21.0%
3373330 4.1.1.337 beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II 0.67 54.0 4.79e-01 100.0% 60.0%
3868320 4.1.1.65 beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.66 52.0 4.82e-01 98.0% 67.7%
4014906 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.20e-01 88.0% 50.0%
3200493 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 49.0 4.81e-01 88.0% 72.7%
3926120 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.66 57.0 4.16e-01 100.0% 37.2%
3622389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 53.0 4.87e-01 100.0% 69.2%
3397846 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.05e-01 100.0% 80.0%
3502290 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.20e-01 100.0% 78.3%
3533318 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 49.0 4.91e-01 88.0% 80.0%
1289661 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.65 52.0 4.75e-01 100.0% 65.7%
3977126 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.65 48.0 4.71e-01 82.0% 74.5%
3478898 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.90e-01 94.0% 70.8%
3264879 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.79e-01 100.0% 65.7%
2561577 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.64 53.0 5.04e-01 100.0% 77.0%
3556321 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.64 54.0 4.70e-01 98.0% 82.5%
3275832 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.64 52.0 5.13e-01 92.0% 87.3%
3855972 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.64 51.0 4.74e-01 96.0% 69.2%
3556601 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.64 55.0 5.13e-01 100.0% 86.2%
3628131 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 52.0 4.26e-01 100.0% 47.0%
3247995 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 53.0 4.80e-01 100.0% 68.6%
3815495 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 54.0 4.85e-01 96.0% 81.4%
3779830 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.63 54.0 4.56e-01 100.0% 57.8%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.36e-01 100.0% 50.5%
3797642 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 54.0 3.68e-01 100.0% 30.3%
3396594 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.83e-01 96.0% 76.7%
3793656 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.62 52.0 3.85e-01 100.0% 35.2%
3215500 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.94e-01 96.0% 83.6%
3241817 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.91e-01 94.0% 78.3%
3267345 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 47.0 4.64e-01 88.0% 76.4%
3926430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.83e-01 96.0% 80.0%
3831339 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.60 51.0 3.29e-01 100.0% 62.3%
2525277 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 49.0 4.69e-01 100.0% 78.0%
3810217 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.62e-01 90.0% 86.0%
5017964 220.1.1.322 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF6141 0.59 41.0 3.55e-01 76.0% 70.8%
4012379 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.59 46.0 3.68e-01 92.0% 60.0%
3805766 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.58 46.0 4.46e-01 86.0% 80.0%
2168114 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.58 37.0 3.67e-01 70.0% 59.6%
3441677 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.42e-01 82.0% 84.0%
3491787 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 40.0 2.65e-01 92.0% 18.6%
3754362 3426.1.1.0 beta meanders › Telethonin › Telethonin › Telethonin 0.55 38.0 3.65e-01 98.0% 61.7%
4023915 220.1.1.53 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.53 43.0 3.50e-01 100.0% 80.0%
3828657 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.60e-01 100.0% 93.0%
4606231 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.53 45.0 3.75e-01 100.0% 73.1%
3328891 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.52 38.0 3.60e-01 82.0% 73.8%
4072296 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.52 42.0 2.67e-01 100.0% 67.5%
3588972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.67e-01 80.0% 92.6%
3854230 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.50 40.0 2.55e-01 100.0% 21.5%