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NC_054785.1__YP_010061678.1__KIV60_gp29__00071
Bact-VirNC_054785.1__YP_010061678.1__KIV60_gp29__00071
Identity
- Accession:
- NC_054785 ↗
- Kingdom:
- phage
Quality
87.1
mean pLDDT
Taxonomy
TaxID: 1912975
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-135
Domain cluster:
rep: NC_054771.1__YP_010060433.1__KIP28_gp19__00071__D2-135
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 32.0 | 3.66e-01 | 100.0% | 64.8% |
| 3fgyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 38.0 | 3.72e-01 | 88.2% | 58.5% |
| 5xyiY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 38.0 | 4.16e-01 | 71.7% | 80.0% |
| 3ni8A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 50.0 | 4.90e-01 | 99.2% | 83.6% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.57 | 41.0 | 4.12e-01 | 74.0% | 97.7% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.57 | 39.0 | 3.71e-01 | 74.0% | 59.5% |
| 5jzjA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 37.0 | 4.26e-01 | 78.0% | 91.5% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 29.0 | 3.51e-01 | 80.3% | 76.2% |
| 4o38A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 40.0 | 4.49e-01 | 77.2% | 97.9% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 35.0 | 3.84e-01 | 86.6% | 77.7% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.55 | 50.0 | 4.82e-01 | 98.4% | 97.9% |
| 4aqcB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 36.0 | 4.08e-01 | 75.6% | 88.5% |
| 1tr0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 34.0 | 3.67e-01 | 86.6% | 74.5% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 48.0 | 3.96e-01 | 100.0% | 62.3% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.53 | 41.0 | 3.87e-01 | 94.5% | 68.0% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 33.0 | 3.83e-01 | 74.0% | 92.0% |
| 6serA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 46.0 | 3.84e-01 | 100.0% | 59.6% |
| 2r55A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 46.0 | 3.90e-01 | 99.2% | 68.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992590 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.66 | 60.0 | 5.36e-01 | 98.4% | 98.9% |
| 4932682 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.61 | 41.0 | 4.26e-01 | 71.7% | 71.7% |
| 5030932 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.61 | 41.0 | 4.40e-01 | 71.7% | 78.2% |
| 3589225 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.61 | 42.0 | 4.12e-01 | 70.1% | 94.1% |
| 4965879 | 881.1.1.44 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 | 0.60 | 53.0 | 4.72e-01 | 97.6% | 94.6% |
| 4588568 | 331.3.1.45 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28462 | 0.58 | 54.0 | 4.46e-01 | 100.0% | 82.3% |
| 4994093 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.58 | 38.0 | 3.50e-01 | 70.1% | 50.0% |
| 3375447 | 274.1.1.46 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › CcmF_C | 0.57 | 38.0 | 4.06e-01 | 97.6% | 80.0% |
| 3269423 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.57 | 51.0 | 4.78e-01 | 97.6% | 98.7% |
| 2142144 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.57 | 53.0 | 4.49e-01 | 100.0% | 69.0% |
| 4954301 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 50.0 | 4.73e-01 | 97.6% | 99.3% |
| 3901366 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 41.0 | 3.02e-01 | 78.0% | 28.8% |
| 5050503 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 41.0 | 2.83e-01 | 78.0% | 29.5% |
| 3270049 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.54 | 49.0 | 4.25e-01 | 100.0% | 82.1% |
| 4260435 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.53 | 39.0 | 3.48e-01 | 81.9% | 52.4% |
| 3593286 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 40.0 | 2.89e-01 | 78.0% | 29.6% |
| 3673212 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 40.0 | 3.23e-01 | 80.3% | 59.2% |
| 3909094 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.52 | 46.0 | 3.86e-01 | 100.0% | 61.3% |
| 3961375 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 46.0 | 3.95e-01 | 99.2% | 93.8% |
| 4511351 | 331.3.1.45 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28462 | 0.51 | 46.0 | 3.93e-01 | 100.0% | 75.2% |
| 3782223 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.51 | 46.0 | 3.82e-01 | 100.0% | 60.0% |
| 3856375 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.50 | 44.0 | 3.73e-01 | 97.6% | 58.2% |