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NC_054789.1__YP_010061993.1__KIV64_gp53__00038
Bact-VirNC_054789.1__YP_010061993.1__KIV64_gp53__00038
Identity
- Accession:
- NC_054789 ↗
- Kingdom:
- phage
Quality
77.6
mean pLDDT
Taxonomy
TaxID: 2744011
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-81
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jenA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.69 | 54.0 | 4.45e-01 | 100.0% | 47.7% |
| 1pu1A00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.68 | 49.0 | 4.33e-01 | 77.4% | 97.8% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.66 | 47.0 | 3.06e-01 | 77.4% | 17.5% |
| 6p3xB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.65 | 47.0 | 3.46e-01 | 100.0% | 27.7% |
| 1ksiA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.60 | 53.0 | 3.19e-01 | 100.0% | 44.0% |
| 1ciiA02 | 3.30.305.10 | Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 | 0.58 | 47.0 | 3.95e-01 | 95.2% | 53.5% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.57 | 51.0 | 3.71e-01 | 100.0% | 45.0% |
| 2nwhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 48.0 | 3.11e-01 | 95.2% | 91.9% |
| 3vfcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 50.0 | 3.81e-01 | 100.0% | 59.1% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.56 | 40.0 | 3.55e-01 | 100.0% | 49.5% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 47.0 | 3.05e-01 | 98.4% | 45.0% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 48.0 | 3.10e-01 | 100.0% | 44.3% |
| 2q0yA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 46.0 | 3.63e-01 | 96.8% | 72.5% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 46.0 | 4.07e-01 | 98.4% | 85.4% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.54 | 33.0 | 3.12e-01 | 91.9% | 48.7% |
| 1kiaA01 | 3.30.46.10 | Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 | 0.54 | 36.0 | 3.37e-01 | 93.5% | 53.0% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 36.0 | 3.52e-01 | 91.9% | 63.4% |
| 2f7sA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 47.0 | 3.34e-01 | 98.4% | 96.1% |
| 1yc9A02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.52 | 37.0 | 3.44e-01 | 100.0% | 57.8% |
| 4cbpA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.70e-01 | 100.0% | 55.5% |
| 2d73A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 41.0 | 2.72e-01 | 91.9% | 87.3% |
| 4hvzA02 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.51 | 42.0 | 3.55e-01 | 96.8% | 89.3% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.50 | 41.0 | 2.78e-01 | 98.4% | 33.7% |
| 3v10A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 40.0 | 3.10e-01 | 95.2% | 71.3% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.50 | 43.0 | 3.04e-01 | 91.9% | 66.5% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4101535 | 331.3.1.10 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL | 0.72 | 63.0 | 4.84e-01 | 100.0% | 93.8% |
| 3942344 | 2485.3.1.19 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 | 0.66 | 53.0 | 3.43e-01 | 88.7% | 27.4% |
| 3778175 | 5052.1.1.1 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF | 0.66 | 54.0 | 3.23e-01 | 90.3% | 82.2% |
| None | — | 0.65 | 46.0 | 2.97e-01 | 77.4% | 16.6% | |
| 4022277 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.64 | 35.0 | 2.91e-01 | 85.5% | 28.3% |
| 3742496 | 2006.1.6.19 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › IML1 | 0.64 | 54.0 | 3.78e-01 | 100.0% | 30.6% |
| 4518214 | 223.1.1.17 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › ScfRs | 0.64 | 38.0 | 3.28e-01 | 74.2% | 37.0% |
| 3958814 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 38.0 | 3.54e-01 | 74.2% | 46.3% |
| 3229165 | 3167.1.1.1 ↗ | a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e | 0.60 | 45.0 | 4.02e-01 | 96.8% | 56.8% |
| 3280088 | 223.1.1.17 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › ScfRs | 0.60 | 36.0 | 3.12e-01 | 74.2% | 37.0% |
| 4065107 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.59 | 46.0 | 2.66e-01 | 83.9% | 13.8% |
| 3795915 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.59 | 35.0 | 3.04e-01 | 82.3% | 36.0% |
| 3825482 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.58 | 42.0 | 3.83e-01 | 85.5% | 56.5% |
| 3682186 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 44.0 | 3.44e-01 | 87.1% | 68.0% |
| 3635930 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.58 | 50.0 | 3.68e-01 | 93.5% | 72.9% |
| 3171956 | 9.1.1.45 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › FBO_C | 0.58 | 41.0 | 3.13e-01 | 87.1% | 31.3% |
| 3750856 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.57 | 44.0 | 2.84e-01 | 85.5% | 94.4% |
| 4591455 | 209.1.2.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase | 0.55 | 45.0 | 3.16e-01 | 93.5% | 68.9% |
| 2099165 | 10.2.1.22 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 | 0.55 | 46.0 | 2.94e-01 | 98.4% | 39.4% |
| 4887778 | 232.1.1.3 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD | 0.55 | 43.0 | 2.92e-01 | 91.9% | 50.5% |
| 3962606 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 43.0 | 3.05e-01 | 85.5% | 36.8% |
| 3360403 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.54 | 32.0 | 3.45e-01 | 87.1% | 70.0% |
| 3781750 | 9.2.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C | 0.54 | 42.0 | 2.95e-01 | 87.1% | 28.6% |
| 4145438 | 3747.1.1.3 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C | 0.52 | 43.0 | 3.60e-01 | 87.1% | 93.0% |
| 3517405 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 41.0 | 4.02e-01 | 100.0% | 82.9% |
| 4843352 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.52 | 30.0 | 3.31e-01 | 75.8% | 78.6% |
| 3301111 | 331.3.1.25 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO | 0.51 | 43.0 | 3.29e-01 | 90.3% | 99.3% |
| 5073756 | 304.139.1.3 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 | 0.51 | 42.0 | 2.77e-01 | 100.0% | 67.7% |
| 4965661 | 327.7.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C | 0.51 | 37.0 | 3.46e-01 | 82.3% | 75.3% |
| 3185221 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.51 | 43.0 | 2.61e-01 | 98.4% | 78.5% |
| 5073773 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 38.0 | 3.13e-01 | 82.3% | 69.2% |
| 4974688 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.50 | 41.0 | 4.00e-01 | 88.7% | 94.3% |
| 3570520 | 306.10.1.4 ↗ | a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › KCTD11_21_C | 0.50 | 43.0 | 3.34e-01 | 100.0% | 63.4% |
| 3340060 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.50 | 34.0 | 3.27e-01 | 100.0% | 60.0% |