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NC_054808.1__YP_010063624.1__KIY82_gp08__00008

Bact-Vir

NC_054808.1__YP_010063624.1__KIY82_gp08__00008

Identity

Accession:
NC_054808 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Turbidovirus› Mycobacterium_phage_Centaur

TaxID: 2488784

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-95
PDB
Domain cluster: rep: KX683875.1__AOZ63952.1__SEA_BAEHEXIC_8__00008__D4-94
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.72 31.0 3.75e-01 91.4% 60.0%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.71 59.0 3.98e-01 89.2% 33.9%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.69 33.0 3.99e-01 94.6% 68.3%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.69 49.0 4.71e-01 90.3% 65.7%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 46.0 4.50e-01 90.3% 62.7%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.67 33.0 4.10e-01 94.6% 76.8%
3ua0A00 6.20.280.10 Special › Other non-globular › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.65 29.0 3.16e-01 80.6% 49.4%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.63 51.0 3.54e-01 89.2% 28.2%
4bnqB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.63 56.0 4.46e-01 100.0% 58.3%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.61 35.0 3.35e-01 97.8% 47.3%
1a66A00 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.61 51.0 4.07e-01 90.3% 64.6%
6wwdB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.60 53.0 4.24e-01 98.9% 68.4%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 32.0 3.29e-01 100.0% 51.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 49.0 4.94e-01 89.2% 98.9%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 46.0 3.52e-01 86.0% 83.8%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 4.01e-01 88.2% 70.5%
2x10A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.86e-01 89.2% 66.3%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 41.0 3.51e-01 100.0% 47.0%
1gr0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 36.0 3.83e-01 90.3% 72.6%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 47.0 3.99e-01 90.3% 74.3%
1xo8A00 2.60.40.1820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 3.94e-01 91.4% 57.0%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.55 40.0 3.63e-01 100.0% 54.5%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 4.21e-01 98.9% 80.7%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.54 31.0 3.38e-01 87.1% 66.3%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 48.0 4.46e-01 100.0% 80.7%
1dhnA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.53 43.0 3.99e-01 89.2% 77.7%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 40.0 3.53e-01 81.7% 91.5%
2cg8C01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.53 42.0 3.93e-01 88.2% 78.2%
2mp4A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 45.0 3.84e-01 100.0% 83.0%
1nbuA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.52 42.0 3.90e-01 88.2% 78.0%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 46.0 4.17e-01 98.9% 74.6%
4jdeA01 2.60.40.3820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 3.99e-01 100.0% 78.8%
1b9lA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.50 40.0 3.77e-01 89.2% 75.6%
6k96B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 38.0 3.78e-01 90.3% 76.3%
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.50 45.0 3.99e-01 100.0% 83.1%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.50 44.0 3.33e-01 98.9% 39.7%
3vpyA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 35.0 3.05e-01 72.0% 86.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3689291 220.1.1.69 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.78 33.0 2.73e-01 100.0% 23.2%
5011691 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 53.0 4.97e-01 90.3% 58.3%
5065450 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.76 43.0 3.56e-01 100.0% 33.5%
4020185 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.74 38.0 3.50e-01 89.2% 38.3%
3782284 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 43.0 3.30e-01 100.0% 26.2%
3267956 11.1.1.1311 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28708 0.71 54.0 4.92e-01 89.2% 61.7%
5055184 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 37.0 3.91e-01 100.0% 56.5%
3543052 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.68 46.0 4.36e-01 90.3% 58.2%
3768529 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.68 46.0 4.27e-01 90.3% 55.7%
2780879 1172.1.1.1 ↗ beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 0.67 36.0 3.44e-01 91.4% 43.2%
3716421 11.1.1.667 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_N 0.67 48.0 4.45e-01 89.2% 60.0%
3372084 11.1.1.667 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_N 0.66 49.0 4.37e-01 90.3% 56.2%
3703774 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 48.0 4.49e-01 90.3% 61.7%
3516502 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.64 35.0 4.03e-01 100.0% 71.4%
5039727 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.64 50.0 3.73e-01 100.0% 35.5%
3262236 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 47.0 4.57e-01 90.3% 71.4%
5079051 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.61 44.0 4.03e-01 100.0% 57.5%
5053601 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 36.0 3.11e-01 100.0% 36.7%
3571085 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 38.0 3.51e-01 100.0% 48.0%
4996027 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.58 51.0 3.70e-01 97.8% 94.2%
5054967 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.03e-01 90.3% 57.3%
4891081 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.56 41.0 3.41e-01 75.3% 55.1%
3899230 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 35.0 3.43e-01 100.0% 58.0%
3928459 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 34.0 3.38e-01 97.8% 58.0%
3422000 11.1.5.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.55 46.0 4.47e-01 90.3% 96.2%
3677542 11.1.5.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.54 46.0 3.77e-01 93.5% 51.4%
3253490 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 46.0 4.19e-01 93.5% 69.6%
4944821 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 32.0 3.76e-01 100.0% 91.7%
3475901 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 33.0 3.43e-01 100.0% 64.4%
3786868 11.1.5.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.54 46.0 3.81e-01 92.5% 66.9%
4003646 11.1.5.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.53 47.0 4.36e-01 96.8% 77.4%
3644828 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.81e-01 90.3% 76.4%
4998370 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 40.0 3.03e-01 82.8% 90.0%
3268814 298.1.1.15 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C 0.53 42.0 3.14e-01 87.1% 100.0%
4923851 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.52 38.0 3.24e-01 76.3% 57.7%
3573769 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.44e-01 83.9% 75.0%
4452393 304.112.1.10 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N 0.52 37.0 3.57e-01 91.4% 65.7%
4141464 4099.1.1.22 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.52 36.0 3.45e-01 88.2% 60.9%
3989865 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 40.0 2.99e-01 82.8% 90.5%
5064859 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 40.0 2.99e-01 82.8% 89.2%
3257637 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 44.0 3.42e-01 94.6% 57.6%
3230331 2008.1.1.27 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.52 44.0 3.09e-01 96.8% 40.3%
3232476 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 32.0 3.20e-01 100.0% 59.0%
3379145 11.1.5.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.51 46.0 3.89e-01 97.8% 66.7%
4969760 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.51 41.0 3.75e-01 90.3% 75.4%
3649104 844.1.1.5 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.51 43.0 3.17e-01 92.5% 52.0%
4995515 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 43.0 3.36e-01 94.6% 51.9%
1291869 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 41.0 3.20e-01 89.2% 48.6%