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NC_054893.1__YP_010064694.1__KMB85_gp40__00040

Bact-Vir

NC_054893.1__YP_010064694.1__KMB85_gp40__00040

Identity

Accession:
NC_054893 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Changchunvirus› Escherichia_phage_vB_EcoS_W011D

TaxID: 2575323

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66
PDB
Domain cluster: rep: ON602745.1__UVX30659.1__S11a_00003__00003__D2-55
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 4.88e-01 100.0% 69.6%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 5.29e-01 100.0% 93.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 4.14e-01 100.0% 47.1%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 48.0 4.44e-01 100.0% 62.8%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 5.01e-01 100.0% 85.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.77e-01 100.0% 80.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.61e-01 96.9% 100.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 40.0 4.40e-01 100.0% 93.8%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 45.0 3.91e-01 87.7% 77.2%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 50.0 4.00e-01 100.0% 92.3%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 5.02e-01 98.5% 100.0%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 38.0 3.81e-01 93.8% 68.7%
4r3aA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 42.0 3.22e-01 87.7% 52.8%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 3.81e-01 100.0% 91.4%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.86e-01 87.7% 26.1%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.54 45.0 3.82e-01 96.9% 73.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 44.0 4.41e-01 100.0% 88.2%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.53 39.0 3.78e-01 83.1% 98.7%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 40.0 2.87e-01 86.2% 47.6%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 4.24e-01 90.8% 95.1%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.78e-01 87.7% 74.0%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.52 40.0 2.91e-01 86.2% 57.3%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 44.0 3.97e-01 95.4% 93.2%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 40.0 4.08e-01 90.8% 98.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4679625 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.61e-01 100.0% 78.3%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 50.0 4.79e-01 100.0% 72.0%
3482683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.20e-01 100.0% 90.0%
2890675 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 50.0 5.05e-01 100.0% 84.4%
3541996 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.64 49.0 3.50e-01 100.0% 28.4%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 50.0 4.65e-01 100.0% 68.8%
3495480 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 48.0 5.03e-01 100.0% 90.0%
3235419 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.95e-01 100.0% 88.3%
4081631 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 50.0 4.77e-01 100.0% 74.7%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.69e-01 100.0% 83.3%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 47.0 4.64e-01 100.0% 77.1%
3616007 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.61 42.0 4.43e-01 100.0% 85.5%
3843554 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 48.0 4.74e-01 100.0% 80.0%
4980673 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 47.0 4.02e-01 86.2% 97.3%
4683074 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.59 50.0 3.95e-01 100.0% 87.3%
4025002 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.59 42.0 3.34e-01 100.0% 37.7%
3625177 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.59 41.0 3.28e-01 100.0% 35.6%
4980703 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 44.0 3.55e-01 84.6% 62.9%
3235628 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.58 41.0 3.33e-01 100.0% 37.7%
3931369 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 41.0 4.58e-01 93.8% 98.0%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 3.93e-01 100.0% 62.5%
3934126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.43e-01 100.0% 86.7%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.58 43.0 3.95e-01 100.0% 60.0%
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.57 48.0 4.73e-01 100.0% 87.1%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.57 41.0 4.30e-01 100.0% 86.7%
3294025 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 42.0 4.52e-01 93.8% 98.2%
185792 9.17.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipoprotein YedD › Lipoprotein YedD › YedD 0.54 45.0 3.83e-01 96.9% 73.5%
3363136 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.54 45.0 3.81e-01 100.0% 66.7%
3662319 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 42.0 4.02e-01 100.0% 72.5%
3829668 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 39.0 2.23e-01 87.7% 6.4%
3165077 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.53 43.0 4.24e-01 100.0% 87.1%
3933539 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.92e-01 100.0% 81.5%
4101587 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.52 44.0 3.87e-01 100.0% 62.9%
3687555 4.1.1.320 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.52 37.0 3.31e-01 100.0% 50.0%
5075469 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.52 39.0 3.97e-01 95.4% 84.6%
4033729 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 35.0 3.19e-01 70.8% 94.4%
5036592 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.51 40.0 3.83e-01 100.0% 74.7%
4798110 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 31.0 2.56e-01 93.8% 29.0%
3215092 2.1.1.235 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26704 0.50 39.0 3.69e-01 87.7% 98.8%