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NC_054898.2__YP_010761435.1__KMB90_gp53__00053

Bact-Vir

NC_054898.2__YP_010761435.1__KMB90_gp53__00053

Identity

Accession:
NC_054898 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-97
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 23.0 2.76e-01 95.6% 47.6%
2pkaA00 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 31.0 3.32e-01 97.8% 56.2%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.59 41.0 4.04e-01 98.9% 68.0%
3apaA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.56 34.0 3.03e-01 100.0% 40.6%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 3.02e-01 93.4% 94.8%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.51 28.0 3.19e-01 100.0% 72.7%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 35.0 3.11e-01 74.7% 96.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929797 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.61 32.0 3.84e-01 83.5% 76.3%
3208578 76.1.1.7 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › DUF7600 0.54 35.0 3.21e-01 98.9% 48.0%
3580193 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 42.0 3.36e-01 90.1% 70.7%
4927382 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.52 42.0 2.99e-01 90.1% 84.8%