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NC_054915.1__YP_010069388.1__KMC07_gp091__00091

Bact-Vir

NC_054915.1__YP_010069388.1__KMC07_gp091__00091

Identity

Accession:
NC_054915 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_vB_EcoM_G8

TaxID: 2508179

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-90
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26897.1 best Phage_T4_Y04OP 84.5 1.10e-23 100.0% 23.8%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.66 56.0 5.37e-01 94.9% 92.1%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.65 43.0 4.34e-01 84.6% 66.7%
1f5mA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 45.0 3.54e-01 75.6% 89.2%
2e8gA01 1.20.1440.150 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.63 46.0 3.96e-01 76.9% 62.9%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.62 53.0 5.14e-01 97.4% 93.2%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.62 44.0 4.30e-01 76.9% 74.4%
1eg3A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 52.0 5.03e-01 97.4% 93.4%
2fm8C01 1.10.4150.10 Mainly Alpha › Orthogonal Bundle › SipA N-terminal domain-like › SipA N-terminal domain-like 0.61 48.0 3.71e-01 89.7% 60.6%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.60 48.0 4.56e-01 88.5% 85.1%
5eufA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.60 42.0 3.15e-01 73.1% 80.0%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.56 40.0 3.62e-01 76.9% 58.2%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.55 39.0 3.51e-01 75.6% 93.0%
3ezhA00 1.20.120.960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain 0.55 45.0 4.10e-01 96.2% 74.6%
4ap2B01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.54 37.0 3.20e-01 71.8% 88.1%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.54 38.0 3.81e-01 73.1% 100.0%
2e7gA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 39.0 3.52e-01 78.2% 87.7%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 35.0 3.62e-01 71.8% 77.0%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 35.0 3.60e-01 78.2% 77.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3263245 198.1.1.1 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.67 56.0 5.65e-01 97.4% 94.9%
3743127 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 58.0 5.77e-01 98.7% 98.8%
4983092 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.63 52.0 5.14e-01 94.9% 97.6%
4227809 3304.1.1.2 ↗ a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.62 49.0 4.14e-01 87.2% 64.4%
3406914 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.61 53.0 4.86e-01 100.0% 72.4%
3166992 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.61 45.0 4.58e-01 79.5% 80.0%
4941549 148.1.3.29 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › LonB_AAA-LID 0.61 44.0 3.94e-01 76.9% 61.7%
3939289 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.60 52.0 4.85e-01 100.0% 77.0%
4138804 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.58 45.0 3.29e-01 87.2% 32.7%
3809406 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.58 50.0 4.58e-01 100.0% 99.0%
3636971 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.57 42.0 3.72e-01 79.5% 73.3%
3605896 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 46.0 4.18e-01 100.0% 97.4%
4022405 101.1.8.3 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I,Topo_C_assoc 0.55 44.0 3.94e-01 87.2% 82.7%
3954859 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.55 46.0 3.74e-01 100.0% 75.9%
5068621 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.54 42.0 4.33e-01 85.9% 94.7%
4642603 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 45.0 3.57e-01 100.0% 61.1%
4458331 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.51 45.0 3.16e-01 100.0% 31.5%
3696454 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.50 36.0 3.14e-01 78.2% 70.7%
D2 high residues 96-184
PDB