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NC_054921.1__YP_010071046.1__KMC13_gp118__00118

Bact-Vir

NC_054921.1__YP_010071046.1__KMC13_gp118__00118

Identity

Accession:
NC_054921 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_vB_EcoM_IME537

TaxID: 2724310

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-95
PDB
Domain cluster: rep: OR525698.1__WQN06384.1__X__00056__D8-103
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.70 52.0 5.17e-01 100.0% 77.1%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 53.0 5.52e-01 100.0% 90.5%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 39.0 4.43e-01 100.0% 88.1%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.39e-01 100.0% 84.3%
4fk1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 49.0 4.45e-01 95.1% 97.3%
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 49.0 3.69e-01 97.5% 49.3%
4z24A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.08e-01 97.5% 61.6%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 32.0 3.59e-01 74.1% 80.6%
3fg2P02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.95e-01 100.0% 97.6%
4akgA03 3.20.180.20 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3 0.51 33.0 3.31e-01 95.1% 65.1%
2eiyB02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.51 36.0 2.96e-01 76.5% 81.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501574 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.70 53.0 5.46e-01 100.0% 86.7%
3556321 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.70 53.0 5.32e-01 100.0% 81.2%
4333277 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.69 51.0 4.97e-01 100.0% 71.1%
3756676 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.69 51.0 4.80e-01 100.0% 64.0%
4975478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 51.0 5.11e-01 100.0% 84.7%
4213135 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.63 44.0 3.86e-01 100.0% 47.6%
4952432 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.58 38.0 4.02e-01 92.6% 78.6%
3181649 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 48.0 3.93e-01 97.5% 86.0%
1563361 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.55 47.0 3.21e-01 96.3% 67.7%
5009419 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 46.0 4.04e-01 95.1% 96.8%
3959816 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 38.0 2.61e-01 92.6% 18.8%
3227515 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 47.0 4.08e-01 100.0% 95.3%
3479475 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 45.0 3.22e-01 95.1% 47.1%
3514479 210.1.2.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain 0.52 41.0 3.75e-01 86.4% 71.6%
4916419 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.51 39.0 3.75e-01 84.0% 75.0%
5013291 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 45.0 3.80e-01 100.0% 73.3%
3178002 2006.1.1.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.50 35.0 2.77e-01 72.8% 52.8%
3486058 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 44.0 3.06e-01 96.3% 43.1%
3962096 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 36.0 3.11e-01 76.5% 54.8%
4937333 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.50 33.0 3.33e-01 79.0% 67.5%
3617837 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.50 35.0 2.76e-01 97.5% 33.7%
5041026 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 43.0 4.33e-01 98.8% 95.3%