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NC_054925.1__YP_010072036.1__KMC17_gp013__00013

Bact-Vir

NC_054925.1__YP_010072036.1__KMC17_gp013__00013

Identity

Accession:
NC_054925 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-43
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26837.1 best Phage_T4_Y00H_G 50.5 2.30e-13 95.2% 51.3%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 42.0 3.66e-01 90.5% 50.0%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 50.0 4.09e-01 97.6% 73.5%
1gyzA00 1.10.1900.20 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Ribosomal protein L20, C-terminal domain 0.60 45.0 4.24e-01 95.2% 95.0%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 49.0 3.32e-01 100.0% 85.5%
4hwdD00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.57 48.0 3.82e-01 100.0% 85.6%
1e2tA01 6.10.140.1930 Special › Helix non-globular › Helix Hairpins › 0.57 46.0 3.97e-01 95.2% 73.2%
3tw6A06 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 44.0 4.15e-01 92.9% 74.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4081303 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.83 41.0 3.84e-01 95.2% 40.0%
4289006 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.72 62.0 4.80e-01 100.0% 65.3%
4928145 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.69 48.0 3.89e-01 73.8% 48.8%
3400366 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.53 43.0 3.12e-01 100.0% 55.7%