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NC_054926.1__YP_010072296.1__KMC18_gp012__00012

Bact-Vir

NC_054926.1__YP_010072296.1__KMC18_gp012__00012

Identity

Accession:
NC_054926 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-50
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26820.1 best Phage_T4_Y00F 45.3 1.90e-11 100.0% 37.6%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b39A13 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 2.96e-01 77.3% 25.7%
3jr1A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.52 36.0 2.45e-01 72.7% 67.5%
1vlrA01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.52 38.0 3.17e-01 90.9% 70.4%
3ue3A03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 40.0 2.82e-01 100.0% 78.1%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 37.0 2.92e-01 84.1% 82.1%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 42.0 2.99e-01 100.0% 86.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4014561 2484.5.1.0 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase 0.66 46.0 3.50e-01 90.9% 29.6%
3691685 1118.1.1.0 a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain 0.59 47.0 3.59e-01 93.2% 36.4%
4213956 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.58 41.0 3.06e-01 75.0% 63.2%
4387576 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.57 40.0 3.06e-01 75.0% 86.7%
3289185 247.1.1.33 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Anti-Pycsar_Apyc1 0.53 37.0 2.28e-01 72.7% 76.4%
4953997 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 36.0 2.84e-01 88.6% 31.7%
3182836 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 35.0 2.42e-01 72.7% 48.8%
4938493 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.05e-01 95.5% 36.2%