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NC_054931.1__YP_010073729.1__KMC23_gp081__00081

Bact-Vir

NC_054931.1__YP_010073729.1__KMC23_gp081__00081

Identity

Accession:
NC_054931 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_T2

TaxID: 2060721

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-66
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26835.1 best Phage_T4_Y04K 42.6 9.20e-11 100.0% 50.0%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.73 44.0 3.87e-01 91.4% 41.2%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 4.79e-01 74.1% 81.0%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.69 59.0 4.67e-01 98.3% 78.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.57e-01 74.1% 77.3%
4okoA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.67 47.0 3.02e-01 75.9% 29.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.26e-01 100.0% 58.3%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.66 44.0 4.49e-01 94.8% 71.4%
3g7nB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 51.0 3.42e-01 96.6% 21.0%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 51.0 3.26e-01 91.4% 37.6%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.63 54.0 4.49e-01 100.0% 86.1%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 49.0 3.18e-01 91.4% 40.1%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 41.0 3.36e-01 70.7% 71.4%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.39e-01 82.8% 78.5%
1wchA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 47.0 3.06e-01 91.4% 36.4%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 50.0 3.20e-01 96.6% 87.7%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 43.0 3.75e-01 86.2% 50.5%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 49.0 3.19e-01 96.6% 39.1%
4o4bB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.57 44.0 3.06e-01 93.1% 79.6%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.57 44.0 4.61e-01 94.8% 94.3%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.56 35.0 3.11e-01 82.8% 43.0%
3ey7A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 46.0 3.82e-01 100.0% 89.3%
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 37.0 3.18e-01 91.4% 37.3%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.58e-01 93.1% 50.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 34.0 2.68e-01 89.7% 26.2%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 44.0 2.92e-01 96.6% 43.0%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 3.69e-01 89.7% 59.0%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.61e-01 82.8% 58.2%
2n88A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 33.0 3.37e-01 96.6% 60.3%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.33e-01 100.0% 45.2%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.22e-01 87.9% 37.6%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.34e-01 87.9% 51.4%
5hh1A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.00e-01 96.6% 48.2%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 33.0 3.16e-01 86.2% 52.9%
1ja1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 40.0 3.17e-01 87.9% 56.6%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 41.0 3.23e-01 100.0% 45.9%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948020 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.72 59.0 4.84e-01 93.1% 85.5%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 48.0 4.65e-01 70.7% 75.4%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 49.0 4.75e-01 74.1% 78.5%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 47.0 4.56e-01 70.7% 75.4%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 47.0 4.55e-01 70.7% 75.4%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 47.0 4.54e-01 70.7% 76.9%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 48.0 4.67e-01 74.1% 78.5%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 48.0 4.68e-01 74.1% 78.5%
5073192 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.68 48.0 4.65e-01 74.1% 86.2%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 48.0 4.64e-01 74.1% 78.5%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 4.47e-01 70.7% 75.4%
3190369 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.66 41.0 3.33e-01 93.1% 34.3%
5018521 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 45.0 4.04e-01 70.7% 55.0%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 46.0 4.46e-01 74.1% 78.5%
3654541 2.1.1.223 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.65 50.0 4.04e-01 100.0% 43.6%
5049449 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 43.0 4.51e-01 93.1% 80.0%
3924984 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.63 51.0 3.30e-01 91.4% 37.5%
4025923 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 43.0 3.89e-01 70.7% 62.5%
4998774 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.63 44.0 2.60e-01 74.1% 45.0%
3675935 2.1.1.223 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.63 46.0 3.54e-01 100.0% 34.1%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.61 44.0 3.47e-01 100.0% 36.0%
3507402 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 48.0 3.10e-01 91.4% 37.5%
3256516 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 37.0 2.40e-01 81.0% 11.8%
3513208 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 40.0 3.44e-01 70.7% 73.7%
4010728 2008.1.1.87 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.59 42.0 3.14e-01 74.1% 49.6%
3532417 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.59 46.0 3.04e-01 91.4% 38.3%
4250193 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.57 40.0 3.57e-01 89.7% 48.9%
3220419 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 42.0 3.52e-01 82.8% 65.5%
3954203 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 46.0 4.31e-01 93.1% 88.0%
4982529 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 38.0 4.07e-01 70.7% 90.0%
3712229 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.56 47.0 3.41e-01 98.3% 32.4%
5030959 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 38.0 3.48e-01 75.9% 52.5%
3392389 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 49.0 3.89e-01 100.0% 49.2%
4230632 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 44.0 3.51e-01 93.1% 68.4%
3470958 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 47.0 3.31e-01 98.3% 37.4%
1290581 11.1.1.340 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › OmcA-like_N 0.54 36.0 3.26e-01 100.0% 48.2%
3460699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 37.0 3.27e-01 70.7% 63.5%
5017692 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 3.34e-01 75.9% 66.7%
5041400 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 34.0 3.78e-01 96.6% 84.4%
3205096 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.53 37.0 2.73e-01 75.9% 93.5%
3633930 376.1.2.26 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF28755 0.53 31.0 2.77e-01 93.1% 40.0%
3807906 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.53 36.0 2.56e-01 74.1% 23.7%
5050980 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 3.95e-01 94.8% 86.0%
3395269 5.1.3.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 0.52 40.0 2.54e-01 96.6% 13.3%
5028505 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.52 36.0 2.92e-01 100.0% 32.9%
4988038 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 38.0 3.11e-01 100.0% 39.2%
4930970 375.1.1.338 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 0.50 30.0 3.07e-01 82.8% 60.0%