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NC_054946.1__YP_010077695.1__KMC38_gp08__00008
Bact-VirNC_054946.1__YP_010077695.1__KMC38_gp08__00008
Identity
- Accession:
- NC_054946 ↗
- Kingdom:
- phage
Quality
71.4
mean pLDDT
Taxonomy
TaxID: 2759710
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 139-206
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2db2A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.83 | 56.0 | 4.94e-01 | 100.0% | 50.0% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.78 | 56.0 | 5.66e-01 | 100.0% | 75.0% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.78 | 54.0 | 5.40e-01 | 100.0% | 71.0% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.77 | 54.0 | 5.38e-01 | 100.0% | 70.4% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.77 | 53.0 | 5.29e-01 | 100.0% | 69.0% |
| 1vw4502 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.75 | 53.0 | 4.79e-01 | 100.0% | 55.4% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.73 | 51.0 | 5.49e-01 | 100.0% | 87.9% |
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 54.0 | 5.52e-01 | 100.0% | 89.1% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 53.0 | 4.44e-01 | 100.0% | 50.9% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 48.0 | 4.88e-01 | 100.0% | 82.1% |
| 3cxjA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.61 | 52.0 | 4.15e-01 | 97.1% | 70.8% |
| 1a9xA06 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.58 | 52.0 | 3.64e-01 | 97.1% | 71.9% |
| 1q9uA00 | 3.30.310.70 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain | 0.58 | 49.0 | 4.13e-01 | 100.0% | 73.4% |
| 2glzA00 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.56 | 42.0 | 3.25e-01 | 79.4% | 45.6% |
| 1a9xA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 50.0 | 3.48e-01 | 97.1% | 72.8% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 48.0 | 4.25e-01 | 100.0% | 71.3% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.52 | 36.0 | 3.23e-01 | 82.4% | 49.1% |
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 42.0 | 3.43e-01 | 100.0% | 68.9% |
| 3f1jA00 | 2.70.20.40 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein | 0.51 | 42.0 | 3.43e-01 | 100.0% | 47.1% |
| 3m5kA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.50 | 36.0 | 2.76e-01 | 76.5% | 35.7% |
| 3e10A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.50 | 35.0 | 2.72e-01 | 75.0% | 37.3% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5021439 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.84 | 56.0 | 5.43e-01 | 100.0% | 62.7% |
| 5001386 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.80 | 62.0 | 5.72e-01 | 100.0% | 65.9% |
| 3963149 | 330.6.1.0 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain | 0.77 | 54.0 | 4.46e-01 | 100.0% | 42.6% |
| 3246974 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.75 | 56.0 | 4.91e-01 | 100.0% | 54.0% |
| 3258455 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.70 | 63.0 | 5.25e-01 | 100.0% | 59.6% |
| 3676562 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.67 | 41.0 | 2.92e-01 | 100.0% | 20.0% |
| 3403839 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.67 | 48.0 | 4.41e-01 | 100.0% | 57.8% |
| 3806458 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.67 | 61.0 | 4.72e-01 | 100.0% | 49.7% |
| 4223302 | 3234.1.1.2 ↗ | a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N | 0.63 | 54.0 | 3.48e-01 | 100.0% | 19.7% |
| 3704403 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 55.0 | 4.92e-01 | 100.0% | 69.5% |
| 5040747 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.63 | 53.0 | 4.13e-01 | 97.1% | 65.8% |
| 4156749 | 3234.1.1.2 ↗ | a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N | 0.62 | 53.0 | 3.45e-01 | 100.0% | 22.1% |
| None | — | 0.60 | 52.0 | 2.99e-01 | 94.1% | 27.2% | |
| 4937992 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.60 | 53.0 | 5.07e-01 | 100.0% | 90.0% |
| None | — | 0.59 | 53.0 | 3.07e-01 | 97.1% | 28.3% | |
| 3539602 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 54.0 | 4.62e-01 | 100.0% | 63.8% |
| 4991282 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.59 | 50.0 | 3.99e-01 | 97.1% | 70.3% |
| 5008618 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.59 | 47.0 | 3.80e-01 | 92.6% | 68.3% |
| 4978118 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.58 | 49.0 | 3.86e-01 | 97.1% | 65.8% |
| None | — | 0.58 | 53.0 | 3.05e-01 | 98.5% | 29.5% | |
| 4051998 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.58 | 50.0 | 2.91e-01 | 95.6% | 23.8% |
| None | — | 0.58 | 52.0 | 3.05e-01 | 98.5% | 28.3% | |
| 3592388 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.58 | 52.0 | 3.41e-01 | 98.5% | 56.1% |
| 3696293 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.58 | 51.0 | 3.22e-01 | 95.6% | 46.2% |
| None | — | 0.58 | 52.0 | 3.04e-01 | 98.5% | 28.3% | |
| None | — | 0.58 | 53.0 | 3.05e-01 | 98.5% | 27.3% | |
| None | — | 0.58 | 52.0 | 3.04e-01 | 98.5% | 29.3% | |
| 4987637 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.58 | 52.0 | 3.08e-01 | 98.5% | 28.8% |
| 1259606 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.58 | 51.0 | 3.40e-01 | 95.6% | 58.9% |
| 4967149 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.57 | 52.0 | 3.26e-01 | 98.5% | 46.3% |
| None | — | 0.57 | 52.0 | 3.02e-01 | 98.5% | 26.5% | |
| None | — | 0.57 | 51.0 | 3.35e-01 | 98.5% | 55.1% | |
| 3383336 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.57 | 51.0 | 3.25e-01 | 98.5% | 44.8% |
| None | — | 0.57 | 49.0 | 2.87e-01 | 94.1% | 28.7% | |
| 3499810 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.57 | 50.0 | 2.92e-01 | 95.6% | 30.5% |
| 3696747 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.56 | 48.0 | 3.12e-01 | 92.6% | 52.8% |
| 4402089 | 5.1.7.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 | 0.56 | 41.0 | 2.29e-01 | 97.1% | 5.2% |
| 3247601 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.56 | 47.0 | 3.04e-01 | 95.6% | 25.9% |
| 3599869 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.56 | 50.0 | 3.27e-01 | 98.5% | 51.9% |
| 4661360 | 59.1.1.9 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF | 0.55 | 47.0 | 3.98e-01 | 95.6% | 74.8% |
| 4962986 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.54 | 47.0 | 3.58e-01 | 100.0% | 49.1% |
| 3257297 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 42.0 | 3.53e-01 | 92.6% | 53.0% |
| 4967347 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.50 | 35.0 | 3.09e-01 | 75.0% | 56.5% |
D2
medium
residues 7-130