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NC_054946.1__YP_010077726.1__KMC38_gp39__00039
Bact-VirNC_054946.1__YP_010077726.1__KMC38_gp39__00039
Identity
- Accession:
- NC_054946 ↗
- Kingdom:
- phage
Quality
55.6
mean pLDDT
Taxonomy
TaxID: 2759710
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 106-234
Domain cluster:
rep: JQ066768.1__AFA44858.1__RcapNL_00018__00018__D87-256
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 38.0 | 3.64e-01 | 70.5% | 95.9% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 37.0 | 3.67e-01 | 70.5% | 97.2% |
| 7watB02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 45.0 | 3.44e-01 | 100.0% | 91.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3945172 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.72 | 64.0 | 5.38e-01 | 100.0% | 58.6% |
| 3513464 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.70 | 59.0 | 6.01e-01 | 92.2% | 99.2% |
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.68 | 61.0 | 5.23e-01 | 100.0% | 81.4% |
| 2738695 | 148.1.3.22 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_5 | 0.62 | 41.0 | 4.43e-01 | 99.2% | 79.6% |
| 3225233 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.60 | 45.0 | 3.37e-01 | 79.1% | 59.4% |
| 4954375 | 601.7.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Abi_C | 0.55 | 33.0 | 3.45e-01 | 92.2% | 62.5% |
| 1680017 | 592.3.1.1 ↗ | alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › Spidroin_N | 0.53 | 44.0 | 4.44e-01 | 88.4% | 92.5% |
| 3917561 | 109.4.1.395 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fanconi_C | 0.52 | 46.0 | 3.27e-01 | 99.2% | 63.5% |
| 3504805 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.51 | 36.0 | 3.51e-01 | 72.1% | 97.1% |
| 4961501 | 629.1.1.1 ↗ | alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del | 0.51 | 40.0 | 3.41e-01 | 85.3% | 85.0% |
| 5010966 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.50 | 43.0 | 3.43e-01 | 93.0% | 80.8% |
| 3716021 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.50 | 35.0 | 3.11e-01 | 72.9% | 71.5% |
D2
high
residues 436-577
Domain cluster:
rep: NC_073481.1__YP_010756090.1__QEJ66_gp08__00008__D21-190
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18013.7 best | Phage_lysozyme2 | 80.0 | 2.70e-22 | 97.9% | 98.5% |