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NC_054952.1__YP_010077883.1__KMC40_gp068__00138

Bact-Vir

NC_054952.1__YP_010077883.1__KMC40_gp068__00138

Identity

Accession:
NC_054952 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-201_319-327
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gr0A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.93 88.0 8.16e-01 100.0% 81.1%
3cinA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.86 84.0 7.36e-01 100.0% 80.2%
3qvsA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.83 79.0 6.91e-01 100.0% 83.5%
1yqeA02 3.40.50.10700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › AF0625-like 0.77 36.0 5.24e-01 99.0% 95.8%
3mweB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.76 48.0 5.78e-01 94.6% 92.8%
2fp4A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.76 44.0 5.57e-01 94.6% 94.3%
3dmyA02 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.71 42.0 4.99e-01 100.0% 84.3%
4pe5D01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.71 45.0 4.69e-01 100.0% 67.7%
5hsgA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.70 39.0 4.92e-01 100.0% 88.8%
2vk2A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.70 40.0 4.96e-01 100.0% 87.8%
3i6iA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 53.0 5.58e-01 100.0% 86.5%
1qv9A01 3.40.50.10830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 0.68 44.0 4.97e-01 100.0% 84.4%
1abeA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 40.0 4.85e-01 100.0% 86.2%
4kvfA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 38.0 4.29e-01 100.0% 70.0%
3vmmA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 42.0 5.14e-01 94.1% 97.8%
1b93B00 3.40.50.1380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain 0.65 39.0 4.52e-01 100.0% 80.8%
3c3pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 44.0 4.48e-01 99.5% 70.2%
5g6rA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 46.0 5.18e-01 100.0% 94.9%
3q3eA02 3.40.50.11380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 47.0 5.24e-01 100.0% 93.9%
4d3dA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 45.0 5.12e-01 100.0% 94.3%
1a9yA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 56.0 5.60e-01 100.0% 92.9%
2pk3A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 53.0 5.21e-01 100.0% 85.4%
4lw8A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 51.0 5.04e-01 100.0% 83.5%
6cv6D00 3.40.50.9100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II 0.60 40.0 4.66e-01 100.0% 94.4%
8a57D01 3.40.50.11060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTPase HflX, N-terminal domain 0.60 31.0 4.31e-01 99.0% 100.0%
3ujpA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.60 34.0 4.48e-01 79.0% 99.1%
4tqgA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 54.0 4.70e-01 100.0% 65.3%
1gy8D02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 56.0 5.31e-01 100.0% 91.1%
2ggsA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 48.0 4.87e-01 100.0% 85.4%
3hh8A02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.58 36.0 4.44e-01 94.1% 96.2%
5bjuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 56.0 4.78e-01 100.0% 68.9%
4ac9C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 4.78e-01 100.0% 89.6%
2jjmA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 48.0 5.10e-01 100.0% 97.2%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 54.0 5.17e-01 100.0% 93.2%
4xfjB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 42.0 4.58e-01 97.1% 90.2%
3okpA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 49.0 5.11e-01 100.0% 96.8%
3sc6A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 47.0 4.72e-01 100.0% 85.3%
5b5lA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 51.0 5.16e-01 100.0% 95.7%
3sftA00 3.40.50.180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylesterase CheB, C-terminal domain 0.57 48.0 4.96e-01 100.0% 96.3%
2vptA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 50.0 5.06e-01 100.0% 94.5%
6r9rA01 3.40.50.10640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like 0.55 49.0 4.99e-01 100.0% 99.5%
2hyiC02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 39.0 4.28e-01 96.1% 91.0%
3hnoA01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 41.0 3.99e-01 100.0% 73.3%
3bzcA03 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.53 33.0 4.12e-01 100.0% 99.2%
7zs9401 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.51 47.0 4.60e-01 100.0% 99.6%
3simA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 45.0 4.14e-01 98.0% 95.6%
1kc0A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 47.0 4.07e-01 100.0% 67.1%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946352 2003.1.1.283 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Inos-1-P_synth 0.94 87.0 8.11e-01 100.0% 80.0%
4944126 2003.1.1.283 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Inos-1-P_synth 0.94 89.0 8.22e-01 100.0% 80.4%
5040925 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.94 91.0 8.00e-01 100.0% 73.8%
3958600 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.93 78.0 8.23e-01 91.7% 94.6%
4955448 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.92 86.0 8.01e-01 100.0% 80.0%
4995826 2003.1.1.59 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.92 90.0 8.09e-01 100.0% 78.1%
4998368 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.92 87.0 8.08e-01 100.0% 81.2%
2561287 2003.1.1.59 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.91 79.0 8.43e-01 96.1% 98.9%
4928886 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.91 82.0 7.71e-01 100.0% 80.0%
4948717 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.90 55.0 5.91e-01 100.0% 70.8%
5050864 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.90 86.0 7.82e-01 100.0% 79.1%
4961559 2003.1.1.59 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.80 77.0 6.71e-01 100.0% 82.8%
3981253 2003.1.1.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CbiJ 0.80 48.0 5.98e-01 100.0% 93.2%
4646263 2003.1.1.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CbiJ 0.79 47.0 6.02e-01 99.5% 99.2%
4647348 2003.1.1.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CbiJ 0.79 47.0 5.64e-01 100.0% 86.4%
2834494 2003.1.1.59 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.79 72.0 6.79e-01 95.6% 96.7%
3966867 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.78 46.0 5.86e-01 100.0% 96.0%
4963801 2003.1.1.75 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF1611_N 0.77 48.0 5.84e-01 95.6% 94.1%
4451463 4978.1.1.1 a/b three-layered sandwiches › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › tRNA_deacylase 0.77 36.0 5.17e-01 99.0% 93.9%
3413126 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.76 43.0 4.88e-01 85.9% 71.2%
3727302 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.75 43.0 4.41e-01 94.1% 58.0%
5076312 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.74 46.0 4.72e-01 100.0% 64.6%
3968368 2007.1.3.11 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › VpsR 0.72 39.0 5.02e-01 100.0% 89.2%
4234884 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.70 43.0 5.30e-01 100.0% 92.6%
4072041 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.70 42.0 4.94e-01 100.0% 83.4%
2756931 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.69 40.0 5.11e-01 94.6% 100.0%
4428137 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.68 41.0 4.96e-01 100.0% 87.9%
5054010 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.67 45.0 4.67e-01 100.0% 71.8%
3266028 7590.1.1.0 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.66 37.0 4.77e-01 100.0% 93.3%
5028363 2005.1.1.16 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Diphthami_syn_2 0.65 42.0 4.04e-01 96.6% 56.6%
5077385 2007.3.1.6 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.65 44.0 5.02e-01 100.0% 91.0%
None 0.64 46.0 5.00e-01 100.0% 87.1%
3968080 2007.3.1.0 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.63 46.0 5.09e-01 100.0% 92.1%
3622925 7590.1.1.2 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.63 38.0 4.00e-01 100.0% 64.2%
5065636 2007.3.1.6 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.63 44.0 4.95e-01 100.0% 92.3%
3387052 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 49.0 5.34e-01 100.0% 98.2%
5000001 2007.3.1.6 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.63 44.0 4.95e-01 100.0% 92.9%
4972017 2007.3.1.0 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.63 44.0 4.96e-01 100.0% 91.9%
4363528 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.62 47.0 5.29e-01 98.0% 99.4%
5068659 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.61 51.0 5.27e-01 100.0% 92.1%
4984677 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.60 37.0 4.52e-01 93.7% 95.4%
5074384 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.60 39.0 3.85e-01 97.1% 60.0%
3583554 7590.1.1.9 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › PF29016 0.60 38.0 4.40e-01 100.0% 87.3%
4933399 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.59 36.0 4.42e-01 93.7% 97.6%
4146501 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.59 56.0 4.77e-01 100.0% 73.9%
3317448 2003.1.1.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.58 54.0 4.48e-01 100.0% 60.3%
5072638 7569.1.1.2 a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › DUF5591 0.58 40.0 4.50e-01 100.0% 90.0%
3598437 2007.1.4.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat 0.57 39.0 4.64e-01 82.4% 98.6%
None 0.57 54.0 4.53e-01 100.0% 72.4%
None 0.57 54.0 4.39e-01 100.0% 65.8%
5036313 2004.1.1.43 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.56 48.0 4.70e-01 99.5% 84.1%
4988215 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.55 49.0 5.06e-01 100.0% 97.4%
3999635 7590.1.1.0 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.55 35.0 4.16e-01 85.9% 93.3%
3971737 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.55 37.0 3.36e-01 81.0% 47.9%
3955545 2003.1.1.141 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Polysacc_synt_2, GDP_Man_Dehyd 0.54 51.0 4.51e-01 100.0% 77.9%
3610120 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.54 51.0 4.41e-01 100.0% 77.3%
3223797 7590.1.1.2 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.54 39.0 4.30e-01 87.3% 91.5%
3937265 7590.1.1.6 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › ArgoMid 0.54 39.0 4.27e-01 87.3% 89.4%
5064893 2484.3.1.1 mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.53 32.0 3.99e-01 91.2% 96.0%
3311547 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.53 39.0 3.92e-01 100.0% 73.3%
3616325 7590.1.1.0 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.52 37.0 4.11e-01 88.3% 91.9%
3695570 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 49.0 3.77e-01 100.0% 73.0%
5027058 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 46.0 3.70e-01 94.1% 95.4%
3793098 7590.1.1.2 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.52 37.0 4.11e-01 87.3% 90.9%
3943513 2484.1.1.74 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tex_YqgF 0.51 33.0 3.81e-01 98.5% 87.3%
3693082 2004.1.1.211 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P 0.51 44.0 4.11e-01 96.1% 75.2%
None 0.50 46.0 3.97e-01 100.0% 65.8%
D2 high residues 206-314
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01658.23 best Inos-1-P_synth 72.9 3.10e-20 100.0% 95.3%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gr0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.97 70.0 8.04e-01 100.0% 95.2%
6k96B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.94 78.0 8.24e-01 100.0% 95.9%
3qvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.94 83.0 8.62e-01 98.2% 99.0%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.91 46.0 6.32e-01 100.0% 93.3%
1p1jA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.90 86.0 8.40e-01 100.0% 98.3%
3cinA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.88 80.0 8.22e-01 100.0% 99.0%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.82 32.0 3.88e-01 89.0% 54.7%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.75 36.0 4.79e-01 92.7% 87.5%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.74 35.0 4.72e-01 96.3% 84.7%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.73 34.0 4.38e-01 96.3% 76.2%
1ff9A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.71 66.0 5.53e-01 100.0% 92.7%
4c81A00 3.30.1330.50 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 0.67 56.0 4.94e-01 89.0% 71.8%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.64 42.0 4.13e-01 100.0% 62.7%
3pqvA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.61 42.0 4.48e-01 86.2% 81.2%
1vk3A03 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.60 48.0 4.39e-01 89.9% 63.9%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 40.0 3.55e-01 100.0% 48.7%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.60 39.0 3.80e-01 100.0% 58.9%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 52.0 3.84e-01 99.1% 64.4%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.59 35.0 3.13e-01 94.5% 42.6%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 35.0 3.69e-01 95.4% 65.3%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 53.0 4.78e-01 100.0% 93.2%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 52.0 4.72e-01 100.0% 89.9%
3dtyB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 50.0 4.26e-01 99.1% 67.0%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 32.0 4.06e-01 100.0% 98.3%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 45.0 3.87e-01 87.2% 63.3%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 29.0 2.88e-01 87.2% 44.4%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 45.0 3.87e-01 89.0% 65.0%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 44.0 3.77e-01 87.2% 65.4%
4iiqC02 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 44.0 3.74e-01 86.2% 65.2%
1zt4C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 44.0 3.76e-01 88.1% 64.2%
2nutB03 2.60.40.1670 Mainly Beta › Sandwich › Immunoglobulin-like › beta-sandwich domain of Sec23/24 0.54 49.0 4.63e-01 100.0% 99.2%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 43.0 3.72e-01 86.2% 63.6%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 42.0 3.44e-01 82.6% 87.8%
4jdzA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 47.0 4.16e-01 100.0% 92.1%
4aq1A02 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 4.14e-01 100.0% 91.2%
1t7vA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 41.0 3.59e-01 87.2% 65.2%
3fruA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 42.0 3.65e-01 88.1% 65.5%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 4.17e-01 98.2% 93.5%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 39.0 3.71e-01 89.0% 67.4%
1m2oA01 2.60.40.1670 Mainly Beta › Sandwich › Immunoglobulin-like › beta-sandwich domain of Sec23/24 0.51 46.0 4.10e-01 100.0% 93.6%
1ix2A00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 4.35e-01 99.1% 95.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944127 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.99 91.0 9.11e-01 100.0% 93.6%
4950024 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.98 93.0 9.28e-01 100.0% 96.4%
5035619 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.98 90.0 9.21e-01 100.0% 98.1%
5009342 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.97 88.0 9.05e-01 100.0% 97.1%
3951817 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.97 91.0 9.16e-01 100.0% 96.4%
4928887 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.97 89.0 9.06e-01 100.0% 98.1%
4971967 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.96 87.0 8.87e-01 99.1% 97.1%
4961560 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.94 85.0 8.74e-01 100.0% 97.1%
4946353 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.94 86.0 8.63e-01 100.0% 93.6%
3664593 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.91 87.0 8.36e-01 100.0% 92.5%
3662007 2003.1.1.283 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Inos-1-P_synth 0.90 87.0 6.57e-01 100.0% 49.3%
3600044 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.90 86.0 8.47e-01 100.0% 97.4%
5059454 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.90 86.0 8.40e-01 100.0% 95.7%
1866738 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.88 80.0 8.08e-01 100.0% 96.3%
3701547 298.1.1.3 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth 0.88 84.0 6.98e-01 100.0% 62.9%
6758 298.1.1.15 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C 0.72 67.0 4.94e-01 100.0% 95.5%
3686127 298.1.1.15 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C 0.72 66.0 4.90e-01 100.0% 96.3%
3990454 298.1.1.15 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C 0.72 65.0 4.99e-01 98.2% 100.0%
3487886 2485.2.1.0 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.66 47.0 4.77e-01 89.9% 75.2%
3300991 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.63 44.0 4.28e-01 86.2% 65.0%
4972097 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 4.62e-01 100.0% 91.8%
4566368 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.59 49.0 4.49e-01 100.0% 69.3%
3786132 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.57 34.0 3.08e-01 94.5% 44.1%
3882099 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 47.0 4.61e-01 100.0% 85.2%
3752681 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.55 45.0 3.76e-01 88.1% 62.6%
3344167 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.55 51.0 4.30e-01 100.0% 88.0%
3484042 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 51.0 4.34e-01 100.0% 85.9%
3707624 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.55 50.0 4.10e-01 100.0% 84.6%
3935677 11.1.1.667 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_N 0.54 38.0 4.30e-01 94.5% 94.1%
5069172 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 4.03e-01 100.0% 72.8%
5018864 11.1.1.895 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29538 0.53 46.0 4.60e-01 100.0% 91.8%
3597507 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 48.0 4.60e-01 100.0% 95.3%
3786868 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.53 49.0 4.25e-01 100.0% 84.4%
3469398 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.53 48.0 4.16e-01 100.0% 86.5%
4522038 11.1.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M 0.53 43.0 4.38e-01 100.0% 89.1%
5070791 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 4.52e-01 99.1% 97.0%
3892767 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 48.0 4.75e-01 100.0% 97.4%
5034496 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 4.44e-01 100.0% 92.7%
5006526 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.52 43.0 4.36e-01 100.0% 92.4%
4956129 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.36e-01 100.0% 91.8%
5007180 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 4.43e-01 100.0% 91.8%
4990964 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.51 42.0 4.30e-01 100.0% 92.4%
4984560 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 4.35e-01 100.0% 93.6%