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YP_010077970.1

Arc-Vir

NC_054953__YP_010077970.1__KMC41-gp23__00023

Identity

Accession:
NC_054953 ↗
Protein ID:
YP_010077970.1 ↗
Kingdom:
archaea

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vertoviridae› Chaovirus› Halobacterium_phage_ChaoS9

TaxID: 2847105

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-104
PDB
Domain cluster: rep: OR180307.1__WNT46115.1__X__00018__D16-112
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22479.3 best Pam3_gp18 29.8 9.80e-07 99.0% 80.2%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.78 38.0 4.25e-01 75.7% 60.5%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 38.0 4.83e-01 79.6% 93.3%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 38.0 4.15e-01 72.8% 66.7%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.64 58.0 4.88e-01 99.0% 100.0%
1ksiA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 39.0 4.05e-01 77.7% 67.7%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 45.0 3.92e-01 82.5% 75.8%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 30.0 3.53e-01 86.4% 72.7%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 50.0 4.30e-01 92.2% 91.1%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 39.0 3.97e-01 78.6% 70.3%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.57 51.0 3.90e-01 100.0% 69.8%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 48.0 4.43e-01 91.3% 86.5%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 48.0 4.17e-01 94.2% 95.7%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.56 45.0 3.20e-01 87.4% 59.9%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 4.00e-01 76.7% 96.5%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.65e-01 76.7% 80.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 43.0 3.89e-01 81.6% 99.3%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 46.0 4.16e-01 93.2% 78.1%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 44.0 3.24e-01 86.4% 88.0%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.55 35.0 3.69e-01 97.1% 73.3%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 41.0 3.94e-01 87.4% 68.5%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 45.0 3.29e-01 94.2% 78.2%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.93e-01 90.3% 64.1%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 42.0 2.99e-01 86.4% 39.5%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 42.0 2.98e-01 86.4% 92.3%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 41.0 2.89e-01 83.5% 51.8%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 45.0 3.12e-01 94.2% 94.2%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.89e-01 90.3% 96.5%
2rdyA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.52 41.0 2.90e-01 89.3% 89.9%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 3.08e-01 94.2% 45.3%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 45.0 3.30e-01 99.0% 92.3%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 3.75e-01 100.0% 66.3%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 3.04e-01 96.1% 51.7%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 3.02e-01 94.2% 65.3%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 4.01e-01 93.2% 87.0%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.51 43.0 2.89e-01 95.1% 40.0%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 33.0 3.44e-01 75.7% 69.7%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 45.0 3.76e-01 100.0% 70.7%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 3.52e-01 100.0% 76.5%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 43.0 3.51e-01 95.1% 98.0%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 38.0 3.34e-01 80.6% 70.8%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045854 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.77 39.0 4.45e-01 74.8% 63.7%
3559516 391.1.1.28 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › CHRDL_1_2_C 0.73 42.0 4.28e-01 84.5% 58.0%
5018521 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 40.0 4.46e-01 84.5% 70.0%
5082785 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 35.0 3.90e-01 73.8% 63.7%
4888666 243.5.1.4 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AGAO-like_N2 0.66 40.0 4.13e-01 75.7% 64.6%
4424927 243.5.1.4 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AGAO-like_N2 0.63 40.0 4.13e-01 77.7% 68.4%
3184366 243.5.1.1 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 0.62 39.0 3.63e-01 74.8% 52.0%
4160858 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.60 54.0 4.78e-01 98.1% 96.6%
3597115 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.59 53.0 5.13e-01 99.0% 98.3%
3445964 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 45.0 3.35e-01 79.6% 50.6%
3257847 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.59 43.0 3.87e-01 87.4% 55.7%
3192395 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.58 39.0 4.04e-01 74.8% 72.0%
3468705 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 47.0 3.17e-01 87.4% 29.8%
3480718 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.58 44.0 2.95e-01 80.6% 27.1%
3666722 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.58 51.0 4.61e-01 100.0% 85.5%
3397645 5.1.4.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N 0.58 48.0 3.41e-01 91.3% 83.7%
3801954 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 46.0 3.17e-01 86.4% 41.1%
3649825 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 47.0 3.21e-01 89.3% 46.6%
3873394 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.56 41.0 3.59e-01 76.7% 71.0%
4029311 5.1.4.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.56 43.0 2.97e-01 82.5% 36.2%
None — 0.56 41.0 3.65e-01 77.7% 72.0%
2697431 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.56 41.0 4.11e-01 77.7% 99.1%
5003966 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 34.0 4.12e-01 98.1% 98.5%
3383121 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 45.0 3.16e-01 87.4% 28.6%
3470252 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.55 40.0 3.98e-01 76.7% 97.3%
4978501 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 49.0 4.37e-01 100.0% 85.9%
3599742 5.1.5.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FG-GAP_3 0.55 43.0 2.90e-01 85.4% 43.1%
2797459 220.1.1.3 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1,Retinal 0.54 42.0 4.10e-01 81.6% 92.9%
4847379 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 42.0 3.02e-01 82.5% 38.6%
3445792 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 44.0 2.98e-01 87.4% 46.6%
3466098 5.1.4.101 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.54 43.0 3.05e-01 86.4% 32.5%
3583345 5.1.4.288 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.54 43.0 2.85e-01 86.4% 31.4%
3396749 5.1.5.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N 0.54 42.0 2.98e-01 85.4% 45.8%
2778196 5.1.4.51 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_4 0.53 46.0 3.14e-01 96.1% 65.9%
3811693 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 44.0 3.12e-01 87.4% 31.4%
3421616 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.53 43.0 2.94e-01 87.4% 33.9%
3291828 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.53 42.0 2.92e-01 85.4% 29.9%
3709835 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 37.0 3.37e-01 73.8% 100.0%
3698170 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.53 41.0 2.83e-01 85.4% 34.6%
4373898 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.53 44.0 2.73e-01 92.2% 31.9%
4995431 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.53 41.0 2.85e-01 84.5% 35.7%
3650512 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 45.0 3.22e-01 94.2% 45.2%
3425789 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.52 45.0 3.19e-01 94.2% 48.1%
3317945 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.52 42.0 2.82e-01 87.4% 31.0%
4929426 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.82e-01 93.2% 67.6%
4613401 5.1.4.51 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_4 0.52 45.0 2.93e-01 96.1% 77.1%
3212364 5.1.5.27 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N 0.52 43.0 2.86e-01 91.3% 42.7%
3245739 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 46.0 3.90e-01 97.1% 73.5%
3452696 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 46.0 3.21e-01 95.1% 41.9%
3740013 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.89e-01 88.3% 36.1%
3685128 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.52 43.0 2.68e-01 91.3% 30.9%
3378755 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.51 43.0 4.08e-01 93.2% 89.6%
3787236 5.1.2.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BMT 0.51 43.0 2.86e-01 96.1% 39.2%
3831707 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 45.0 3.10e-01 97.1% 38.0%
1349153 5.1.11.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.51 45.0 2.90e-01 96.1% 45.1%
3468426 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 44.0 3.03e-01 94.2% 42.6%
3450584 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 43.0 3.08e-01 94.2% 46.7%
3660574 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 2.93e-01 93.2% 73.0%
3305683 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 42.0 2.99e-01 95.1% 51.8%
3740914 5.1.4.80 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.50 39.0 2.70e-01 82.5% 30.3%
3882965 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.50 42.0 2.75e-01 93.2% 76.5%
3691625 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 40.0 2.72e-01 88.3% 26.4%