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YP_010077979.1

Arc-Vir

NC_054953__YP_010077979.1__KMC41-gp32__00032

Identity

Accession:
NC_054953 ↗
Protein ID:
YP_010077979.1 ↗
Kingdom:
archaea

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vertoviridae› Chaovirus› Halobacterium_phage_ChaoS9

TaxID: 2847105

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-154
PDB
Domain cluster: rep: KC292025__AGM11293.1__HHTV1-38__00038__D3-146
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zruC01 2.60.520.10 Mainly Beta › Sandwich › Triple-stranded beta-helix › Phage fibre proteins 0.71 56.0 6.07e-01 100.0% 96.9%
2lgnA00 2.60.40.2850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 23.0 3.20e-01 79.6% 93.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038875 4166.1.1.0 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.73 49.0 5.63e-01 86.2% 90.4%
3589732 4166.1.1.2 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Caudo_bapla_N 0.72 63.0 6.25e-01 93.4% 89.0%
2042 4166.1.1.2 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Caudo_bapla_N 0.71 56.0 6.07e-01 100.0% 96.9%
2390431 4166.1.1.1 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › T6SS_VasE 0.65 57.0 5.30e-01 93.4% 86.6%
D2 medium residues 168-198
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.77 60.0 5.24e-01 100.0% 58.2%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.77 62.0 5.74e-01 100.0% 74.4%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.76 59.0 5.21e-01 100.0% 56.9%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.55 45.0 2.56e-01 100.0% 74.3%
4pfyA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.52 38.0 2.48e-01 74.2% 13.6%
4exoA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 2.59e-01 96.8% 26.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3804735 822.1.1.3 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 0.63 46.0 4.02e-01 93.5% 79.7%
3509327 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.55 39.0 2.20e-01 71.0% 46.5%
3389424 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.55 38.0 3.40e-01 74.2% 57.4%