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YP_010077984.1

Arc-Vir

NC_054953__YP_010077984.1__KMC41-gp38__00037

Identity

Accession:
NC_054953 ↗
Protein ID:
YP_010077984.1 ↗
Kingdom:
archaea

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vertoviridae› Chaovirus› Halobacterium_phage_ChaoS9

TaxID: 2847105

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-165
PDB
Domain cluster: rep: qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00094__D2-170
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p6vA00 2.40.280.10 Mainly Beta › Beta Barrel › Small Protein B; Chain: A; › Small protein B 0.68 43.0 4.85e-01 98.2% 83.2%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.60 24.0 3.20e-01 100.0% 65.6%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 22.0 2.99e-01 98.8% 62.8%
4rv9A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 26.0 2.45e-01 99.4% 33.8%
1dj0A01 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.56 26.0 2.79e-01 87.2% 47.8%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 29.0 3.46e-01 96.3% 73.7%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 32.0 3.49e-01 97.0% 76.6%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 28.0 3.25e-01 98.2% 73.9%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.50 29.0 3.12e-01 100.0% 63.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961800 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.97 82.0 8.91e-01 97.0% 100.0%
4961598 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.97 84.0 8.94e-01 100.0% 99.3%
4990693 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.90 84.0 8.23e-01 97.6% 100.0%
4940861 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.89 71.0 7.79e-01 99.4% 98.5%
4941647 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.89 71.0 7.78e-01 99.4% 98.5%
4932909 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.89 71.0 7.81e-01 99.4% 99.3%
4933787 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.89 83.0 8.21e-01 97.6% 100.0%
4956526 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.89 62.0 7.27e-01 98.8% 97.5%
4940563 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.88 53.0 6.84e-01 97.6% 100.0%
4931545 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.87 69.0 7.54e-01 100.0% 98.5%
4933665 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.82 46.0 6.10e-01 99.4% 100.0%
4961846 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.82 77.0 7.57e-01 99.4% 100.0%
3839204 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.81 77.0 7.44e-01 99.4% 99.4%
5002559 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.81 76.0 7.67e-01 99.4% 99.4%
5005257 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.81 77.0 7.58e-01 99.4% 99.4%
3955488 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.80 42.0 5.85e-01 100.0% 100.0%
5044641 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.79 75.0 7.42e-01 98.8% 99.4%
4955688 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.79 74.0 7.44e-01 98.2% 98.2%
4934193 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.78 72.0 7.36e-01 99.4% 100.0%
4952930 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.78 42.0 5.64e-01 94.5% 100.0%
3838172 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.78 73.0 7.19e-01 98.2% 100.0%
3955159 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.76 72.0 6.63e-01 100.0% 98.0%
3586977 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.75 71.0 6.96e-01 99.4% 98.3%
3655963 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 26.0 4.04e-01 100.0% 75.7%
4945101 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.73 69.0 6.71e-01 100.0% 99.4%
3382396 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 26.0 3.59e-01 98.8% 63.5%
3383879 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 25.0 3.70e-01 98.2% 70.7%
5051051 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.70 66.0 6.55e-01 99.4% 99.4%
3965651 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.70 25.0 3.67e-01 99.4% 70.7%
4597943 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.67 43.0 4.61e-01 98.2% 73.1%
4552630 2.21.1.1 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB 0.67 44.0 4.94e-01 98.2% 85.6%
4557109 2.21.1.1 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB 0.67 43.0 4.61e-01 98.2% 73.8%
4601389 2.21.1.1 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB 0.67 44.0 4.61e-01 98.2% 73.0%
4093835 2.21.1.1 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB 0.66 43.0 4.93e-01 98.2% 88.3%
3815383 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 25.0 3.37e-01 98.8% 64.7%
3825541 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.66 25.0 3.03e-01 100.0% 50.9%
5003892 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.65 48.0 5.50e-01 97.0% 100.0%
3365684 306.6.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.64 25.0 3.21e-01 99.4% 60.0%
3369744 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 25.0 2.98e-01 100.0% 53.0%
3994114 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.54 20.0 3.17e-01 78.0% 88.3%
3510290 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.53 20.0 3.10e-01 78.0% 88.3%
5025384 304.165.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › Ta1207 0.53 37.0 3.84e-01 100.0% 76.5%
4589614 5051.1.1.7 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp 0.51 41.0 3.10e-01 85.4% 66.4%
D2 high residues 184-366
PDB
Domain cluster: rep: RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00057__D350-452_544-640
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07282.19 best Cas12f1-like_TNB 69.2 3.70e-19 36.6% 100.0%