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YP_010077991.1

Arc-Vir

NC_054953__YP_010077991.1__KMC41-gp46__00044

Identity

Accession:
NC_054953 ↗
Protein ID:
YP_010077991.1 ↗
Kingdom:
archaea

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-73
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.73 56.0 5.45e-01 88.4% 75.0%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.72 44.0 4.08e-01 91.3% 49.4%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.71 54.0 5.51e-01 89.9% 83.6%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 57.0 5.74e-01 94.2% 88.7%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.69 50.0 4.03e-01 92.8% 40.2%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.68 52.0 4.90e-01 97.1% 67.1%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.68 49.0 4.23e-01 88.4% 48.2%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.65 47.0 4.09e-01 89.9% 51.5%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.65 45.0 3.71e-01 100.0% 41.7%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 48.0 4.27e-01 87.0% 69.5%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 38.0 3.42e-01 92.8% 42.2%
3hh7A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.60 46.0 4.81e-01 100.0% 87.7%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 41.0 2.75e-01 73.9% 59.5%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 3.52e-01 89.9% 47.1%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.59 45.0 3.24e-01 84.1% 91.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 40.0 3.71e-01 100.0% 54.3%
5e53A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 3.69e-01 89.9% 52.7%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 45.0 4.01e-01 88.4% 56.9%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.58 43.0 4.18e-01 89.9% 72.7%
3hhmA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 49.0 3.98e-01 100.0% 71.6%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 41.0 2.62e-01 76.8% 94.2%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 46.0 3.65e-01 97.1% 42.3%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 45.0 3.83e-01 89.9% 55.5%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 43.0 3.94e-01 87.0% 60.2%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 43.0 3.84e-01 87.0% 59.3%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.56 35.0 3.02e-01 92.8% 39.6%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 44.0 3.94e-01 85.5% 100.0%
1cfbA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 3.32e-01 89.9% 45.3%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 39.0 2.99e-01 72.5% 90.0%
1xdpA02 3.30.1840.10 Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain 0.55 45.0 3.25e-01 89.9% 35.6%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.55e-01 91.3% 47.5%
4le5A02 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.54 45.0 3.72e-01 97.1% 54.0%
4qd4A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 37.0 2.44e-01 73.9% 88.2%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.65e-01 91.3% 58.9%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.54 35.0 3.62e-01 89.9% 71.2%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 45.0 3.55e-01 92.8% 52.1%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.29e-01 89.9% 50.0%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.79e-01 91.3% 57.3%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 41.0 3.72e-01 87.0% 61.5%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 46.0 3.03e-01 98.6% 32.3%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.53 37.0 3.41e-01 91.3% 54.7%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.56e-01 87.0% 86.1%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.52 45.0 3.96e-01 100.0% 82.1%
5lvxC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 42.0 3.59e-01 87.0% 98.1%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.24e-01 91.3% 40.8%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.51 39.0 3.37e-01 91.3% 52.3%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 41.0 2.83e-01 97.1% 34.0%
1m1cA00 3.90.1840.10 Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein 0.50 40.0 2.41e-01 94.2% 53.8%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 41.0 3.26e-01 91.3% 53.8%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4016088 821.1.1.3 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.79 51.0 4.40e-01 89.9% 43.8%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.78 60.0 5.87e-01 88.4% 76.0%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.77 54.0 5.73e-01 89.9% 83.3%
5007155 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.76 49.0 5.94e-01 89.9% 100.0%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.76 61.0 6.32e-01 91.3% 93.7%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.75 60.0 6.25e-01 91.3% 92.2%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.75 61.0 5.99e-01 88.4% 98.7%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.75 58.0 5.80e-01 88.4% 81.4%
5014007 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.74 52.0 5.75e-01 98.6% 92.7%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 58.0 5.70e-01 91.3% 77.3%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 59.0 4.99e-01 91.3% 54.6%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.73 54.0 6.04e-01 87.0% 98.2%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.72 57.0 5.02e-01 91.3% 58.4%
3917143 304.100.1.0 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like 0.72 57.0 5.98e-01 88.4% 98.3%
3211415 11.1.1.888 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3, DB 0.71 43.0 3.03e-01 89.9% 19.5%
3556053 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.71 44.0 3.91e-01 92.8% 44.0%
3994984 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.71 57.0 5.90e-01 100.0% 93.8%
4084879 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 59.0 5.54e-01 92.8% 75.3%
5469 4943.1.1.2 a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › DUF2024 0.68 52.0 4.90e-01 97.1% 67.1%
5028854 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.68 47.0 3.75e-01 100.0% 36.0%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 51.0 5.44e-01 91.3% 93.2%
3559814 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 45.0 4.08e-01 92.8% 50.5%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 50.0 5.33e-01 91.3% 91.7%
3396979 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 43.0 3.87e-01 89.9% 47.4%
3636893 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 43.0 3.84e-01 89.9% 46.0%
5053865 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 51.0 4.66e-01 98.6% 64.4%
3508990 3115.3.1.2 a+b two layers › GP2-like › P56 › P56 › DUF2922 0.64 52.0 5.44e-01 100.0% 96.9%
3510040 3115.3.1.2 a+b two layers › GP2-like › P56 › P56 › DUF2922 0.63 54.0 5.21e-01 95.7% 86.3%
4330212 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.63 50.0 4.31e-01 88.4% 53.9%
5047755 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.63 45.0 3.63e-01 100.0% 37.9%
5001251 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 43.0 3.90e-01 91.3% 54.4%
4255735 101.1.9.98 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.62 47.0 3.90e-01 82.6% 95.2%
3588755 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.37e-01 100.0% 94.6%
4962205 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.60 47.0 4.08e-01 88.4% 53.0%
3955717 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.60 49.0 4.05e-01 89.9% 51.2%
3874464 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 53.0 3.37e-01 100.0% 38.3%
3483062 221.1.1.116 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 0.59 49.0 4.12e-01 91.3% 93.3%
5009745 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.59 48.0 4.07e-01 89.9% 53.9%
4030329 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 47.0 3.85e-01 89.9% 91.1%
3905094 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 47.0 3.85e-01 89.9% 48.9%
4647057 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 38.0 3.36e-01 100.0% 44.8%
3739303 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 44.0 3.80e-01 89.9% 50.8%
4031235 3986.2.1.2 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › DUF2922 0.57 44.0 4.44e-01 100.0% 87.1%
4027196 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.48e-01 75.4% 50.0%
4020546 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 43.0 3.60e-01 87.0% 48.5%
4960838 11.14.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.56 41.0 3.79e-01 100.0% 61.1%
3820431 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.55 40.0 2.63e-01 79.7% 73.7%
3933380 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 42.0 3.70e-01 87.0% 52.2%
3573883 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 43.0 3.61e-01 87.0% 50.4%
4939155 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 43.0 3.63e-01 87.0% 49.6%
3411558 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 49.0 3.89e-01 100.0% 80.0%
4857347 304.139.2.1 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.54 38.0 2.48e-01 72.5% 99.0%
3585350 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 42.0 3.69e-01 88.4% 82.7%
3734833 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.54 40.0 3.79e-01 85.5% 97.8%
3738952 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.40e-01 91.3% 51.6%
5050481 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 2.96e-01 75.4% 73.4%
5058689 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 36.0 3.23e-01 91.3% 51.0%
5019540 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.51 40.0 3.45e-01 85.5% 78.2%
3683353 4004.1.1.5 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc 0.51 43.0 3.52e-01 98.6% 95.1%
3880439 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 45.0 2.71e-01 98.6% 25.8%
3573951 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 38.0 3.36e-01 89.9% 52.7%
3598842 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.51 42.0 3.31e-01 92.8% 42.7%
2103505 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.34e-01 100.0% 53.2%
3609926 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.50 38.0 3.22e-01 87.0% 50.8%