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YP_010078083.1
Arc-VirNC_054954__YP_010078083.1__KMC42-gp53__00053
Identity
- Accession:
- NC_054954 ↗
- Protein ID:
- YP_010078083.1 ↗
- Kingdom:
- archaea
Quality
64.9
mean pLDDT
Taxonomy
TaxID: 114777
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-102
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.67 | 47.0 | 5.15e-01 | 78.0% | 86.7% |
| 5fgzA02 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.53 | 43.0 | 3.78e-01 | 92.0% | 93.3% |
| 3hzsA00 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.53 | 45.0 | 3.65e-01 | 98.0% | 89.0% |
| 2iqjB00 | 1.10.220.150 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein | 0.51 | 44.0 | 4.12e-01 | 94.0% | 98.4% |
| 2owaA01 | 1.10.220.150 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein | 0.50 | 43.0 | 4.10e-01 | 94.0% | 92.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.84 | 58.0 | 6.66e-01 | 82.0% | 93.3% |
| 5080086 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.81 | 53.0 | 5.95e-01 | 75.0% | 83.7% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.79 | 48.0 | 5.97e-01 | 77.0% | 95.4% |
| 5080395 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 58.0 | 5.55e-01 | 85.0% | 69.6% |
| 3952384 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 53.0 | 5.46e-01 | 87.0% | 75.8% |
| 5082962 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.75 | 62.0 | 5.99e-01 | 96.0% | 79.1% |
| 3953059 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 51.0 | 5.42e-01 | 87.0% | 78.9% |
| 4303143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 41.0 | 4.43e-01 | 72.0% | 63.5% |
| 2485694 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 60.0 | 5.34e-01 | 91.0% | 64.2% |
| 5017772 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 56.0 | 5.63e-01 | 82.0% | 83.0% |
| 3977110 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.70 | 53.0 | 5.76e-01 | 80.0% | 96.5% |
| 3944337 | 378.1.1.28 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NinG | 0.70 | 60.0 | 5.40e-01 | 95.0% | 68.9% |
| 5059323 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.68 | 61.0 | 5.29e-01 | 97.0% | 70.0% |
| 3588377 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.67 | 48.0 | 4.88e-01 | 75.0% | 74.0% |
| None | — | 0.67 | 61.0 | 5.38e-01 | 100.0% | 97.9% | |
| 3561303 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.66 | 54.0 | 4.55e-01 | 88.0% | 60.6% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.65 | 51.0 | 4.99e-01 | 82.0% | 78.2% |
| 3685300 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.64 | 58.0 | 4.50e-01 | 100.0% | 80.0% |
| 4943720 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.64 | 56.0 | 5.20e-01 | 96.0% | 98.4% |
| 1684075 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.64 | 56.0 | 4.71e-01 | 96.0% | 71.9% |
| 119353 | 377.7.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › YbcO | 0.62 | 43.0 | 4.79e-01 | 83.0% | 88.9% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.61 | 53.0 | 5.02e-01 | 94.0% | 80.0% |
| 4607935 | 378.1.1.29 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › ICEA | 0.59 | 54.0 | 4.97e-01 | 100.0% | 90.0% |
| 3577651 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.58 | 35.0 | 4.13e-01 | 87.0% | 92.3% |
| 3689918 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 44.0 | 4.51e-01 | 93.0% | 89.5% |
| 3869469 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.55 | 37.0 | 3.28e-01 | 93.0% | 48.6% |
| 3939139 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.54 | 39.0 | 4.04e-01 | 94.0% | 80.0% |
| 3992639 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.50 | 37.0 | 3.76e-01 | 93.0% | 77.0% |