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YP_010078088.1

Arc-Vir

NC_054954__YP_010078088.1__KMC42-gp58__00058

Identity

Accession:
NC_054954 ↗
Protein ID:
YP_010078088.1 ↗
Kingdom:
archaea

Quality

77.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vertoviridae› Myohalovirus› Natrialba_phage_PhiCh1

TaxID: 114777

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-73
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 46.0 3.49e-01 78.5% 95.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.45e-01 70.8% 87.6%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.59 46.0 3.62e-01 89.2% 62.1%
1u0mA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 45.0 3.57e-01 87.7% 63.7%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.56 48.0 3.10e-01 96.9% 48.4%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 36.0 4.05e-01 73.8% 95.6%
5ysqB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 41.0 2.75e-01 81.5% 28.9%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 48.0 3.03e-01 96.9% 75.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 47.0 4.25e-01 100.0% 89.1%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.55 45.0 2.98e-01 90.8% 50.5%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 43.0 2.88e-01 89.2% 29.6%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 3.08e-01 96.9% 42.5%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.53 31.0 3.28e-01 86.2% 63.6%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.52 41.0 2.69e-01 89.2% 37.0%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.51 42.0 3.92e-01 87.7% 85.9%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.51 37.0 3.34e-01 90.8% 54.3%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.51 38.0 3.16e-01 84.6% 45.2%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.50 42.0 3.85e-01 100.0% 91.5%
3kxyT00 6.20.290.10 Special › Other non-globular › Dna Ligase; domain 1 › 0.50 29.0 2.93e-01 83.1% 55.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4569264 857.1.1.1 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.71 49.0 4.25e-01 70.8% 56.8%
4620055 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.66 56.0 3.83e-01 95.4% 71.2%
3979711 252.2.1.6 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.66 44.0 4.46e-01 73.8% 69.2%
224284 857.1.1.1 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.64 46.0 4.15e-01 76.9% 66.7%
3822451 101.33.1.1 ↗ alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain › DNMT1-RFD 0.64 50.0 3.98e-01 84.6% 54.6%
4116909 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.63 49.0 3.09e-01 84.6% 50.0%
4091699 857.1.1.1 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.62 43.0 3.74e-01 72.3% 47.0%
3581101 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.60 48.0 3.53e-01 86.2% 48.2%
4018260 141.1.1.8 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 0.60 49.0 3.10e-01 89.2% 35.4%
3249581 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.59 47.0 3.10e-01 86.2% 63.3%
3234018 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 49.0 3.13e-01 93.8% 80.3%
4481010 857.1.1.1 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.58 41.0 3.62e-01 75.4% 57.0%
5065366 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.58 45.0 3.71e-01 84.6% 60.0%
4019671 109.4.1.64 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.57 46.0 2.97e-01 87.7% 27.2%
3787894 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.55 45.0 2.85e-01 90.8% 61.4%
4336179 3322.1.1.1 ↗ alpha bundles › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › FAS_N 0.55 45.0 3.58e-01 89.2% 60.8%
3680215 109.4.1.880 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LTN1_E3_ligase_6th 0.55 40.0 2.27e-01 76.9% 31.8%
4418050 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 43.0 2.70e-01 87.7% 39.0%
3714703 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.54 42.0 3.62e-01 83.1% 77.0%
3656048 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.53 42.0 2.40e-01 93.8% 13.2%
4979047 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 2.85e-01 76.9% 53.9%
3214509 2006.1.6.39 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb 0.53 47.0 3.15e-01 100.0% 80.0%
5031662 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.51 41.0 3.36e-01 90.8% 97.6%
3784535 109.4.1.1973 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28685 0.51 39.0 2.31e-01 84.6% 25.4%
5021572 2002.1.1.36 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.50 42.0 2.74e-01 96.9% 42.5%