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YP_010078090.1

Arc-Vir

NC_054954__YP_010078090.1__KMC42-gp60__00060

Identity

Accession:: NC_054954 ↗
Protein ID:: YP_010078090.1 ↗
Kingdom:: archaea

Quality

64.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vertoviridae› Myohalovirus› Natrialba_phage_PhiCh1

TaxID: 114777

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kqrA01	3.30.1910.20	Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain	0.63	46.0	4.17e-01	82.4%	85.1%
2p3wB01	2.30.42.10	Mainly Beta › Roll › Pdz3 Domain › PDZ domain	0.59	45.0	3.85e-01	100.0%	47.9%
4clfA02	3.30.70.1230	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain	0.57	41.0	2.98e-01	84.3%	71.2%
3ofgB00	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.55	39.0	3.30e-01	74.5%	97.7%
1wc1C00	3.30.70.1230	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain	0.54	41.0	2.93e-01	90.2%	94.3%
7txnA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	41.0	3.50e-01	90.2%	77.8%
2mhyA00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.53	36.0	3.51e-01	72.5%	66.7%
5nr1A01	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.51	39.0	3.10e-01	84.3%	62.3%
2co5A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	32.0	2.73e-01	84.3%	34.8%
3euoA02	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.50	37.0	2.85e-01	92.2%	54.8%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3643866	904.1.1.0 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain	0.66	47.0	4.96e-01	78.4%	91.1%
3414376	386.1.1.238 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_6	0.61	39.0	3.19e-01	96.1%	35.8%
5082299	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.58	37.0	3.12e-01	90.2%	34.7%
None	—		0.56	36.0	3.00e-01	92.2%	34.0%
5004725	302.4.1.0 ↗	a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit	0.53	39.0	3.09e-01	84.3%	39.0%
4027757	101.1.2.137 ↗	alpha arrays › HTH › HTH › winged helix domain › OST-HTH	0.53	33.0	2.40e-01	76.5%	20.0%
3541292	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	36.0	3.02e-01	76.5%	49.5%
5017355	2004.1.1.5 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran	0.52	38.0	2.55e-01	88.2%	88.1%
3944944	101.1.2.261 ↗	alpha arrays › HTH › HTH › winged helix domain › MC2	0.52	31.0	2.94e-01	92.2%	46.2%
3220364	6166.1.1.1 ↗	alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24	0.51	40.0	2.79e-01	94.1%	73.0%
3492930	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.50	33.0	3.68e-01	80.4%	100.0%