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YP_010078095.1
Arc-VirNC_054954__YP_010078095.1__KMC42-gp65__00065
Identity
- Accession:
- NC_054954 ↗
- Protein ID:
- YP_010078095.1 ↗
- Kingdom:
- archaea
Quality
91.9
mean pLDDT
Taxonomy
TaxID: 114777
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 147-290
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07505.18 best | DUF5131 | 90.9 | 1.30e-25 | 84.0% | 43.7% |
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gb7D00 | 3.40.91.80 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.62 | 38.0 | 3.04e-01 | 90.3% | 29.8% |
| 8sl7B01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.62 | 48.0 | 3.92e-01 | 81.2% | 74.4% |
| 3qz6A00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.61 | 48.0 | 3.96e-01 | 83.3% | 54.4% |
| 3lk7A03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.61 | 39.0 | 4.01e-01 | 86.1% | 67.2% |
| 2ykyA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.60 | 45.0 | 3.77e-01 | 77.1% | 62.9% |
| 1ax4A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.60 | 46.0 | 3.79e-01 | 80.6% | 66.0% |
| 3gjuA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 44.0 | 3.57e-01 | 77.8% | 64.9% |
| 6dvsA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 44.0 | 3.88e-01 | 77.8% | 60.5% |
| 1kcxA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.59 | 52.0 | 3.85e-01 | 96.5% | 76.4% |
| 3chvA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 52.0 | 4.14e-01 | 95.1% | 80.6% |
| 4e3qA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 45.0 | 3.59e-01 | 79.9% | 65.1% |
| 1jg8A01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 45.0 | 3.72e-01 | 80.6% | 60.6% |
| 5t9gB03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 50.0 | 3.89e-01 | 94.4% | 77.5% |
| 2wagA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 50.0 | 4.38e-01 | 95.1% | 81.1% |
| 5euvA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 49.0 | 3.92e-01 | 94.4% | 76.0% |
| 3fkkA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 48.0 | 3.80e-01 | 92.4% | 61.5% |
| 6d1pB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 49.0 | 3.82e-01 | 94.4% | 77.1% |
| 3lwsA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 43.0 | 3.59e-01 | 80.6% | 56.6% |
| 3fn9A03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 48.0 | 3.84e-01 | 94.4% | 76.5% |
| 3w1hA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 42.0 | 3.42e-01 | 78.5% | 60.1% |
| 8balC01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 47.0 | 3.69e-01 | 93.8% | 85.9% |
| 6fcxA01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.55 | 48.0 | 3.82e-01 | 93.8% | 76.5% |
| 3o0fA01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.55 | 46.0 | 4.04e-01 | 90.3% | 67.6% |
| 1jsxA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 34.0 | 3.09e-01 | 81.9% | 44.6% |
| 5a6sA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 48.0 | 4.34e-01 | 95.1% | 82.5% |
| 1ygyA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 44.0 | 4.57e-01 | 97.9% | 91.9% |
| 2zxqA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 47.0 | 3.71e-01 | 94.4% | 77.0% |
| 2afbB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 46.0 | 3.58e-01 | 94.4% | 89.6% |
| 2qdeA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.54 | 46.0 | 3.91e-01 | 93.8% | 76.6% |
| 4kruA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 47.0 | 4.18e-01 | 97.9% | 91.6% |
| 3ktsA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 41.0 | 3.77e-01 | 95.8% | 62.7% |
| 3canA00 | 3.80.30.10 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › pyruvate-formate lyase- activating enzyme | 0.53 | 49.0 | 4.72e-01 | 99.3% | 93.2% |
| 1jfxA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 46.0 | 4.08e-01 | 96.5% | 96.3% |
| 4zi5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 43.0 | 3.64e-01 | 86.1% | 86.2% |
| 2q9uA02 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.53 | 43.0 | 4.30e-01 | 86.1% | 98.6% |
| 3ecsD02 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.52 | 42.0 | 3.76e-01 | 85.4% | 86.7% |
| 6wb4B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 44.0 | 3.44e-01 | 96.5% | 43.3% |
| 1f8wA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 37.0 | 3.71e-01 | 93.8% | 72.0% |
| 2zc0A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 46.0 | 3.98e-01 | 100.0% | 74.8% |
| 7d44C01 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.51 | 41.0 | 3.71e-01 | 84.7% | 92.7% |
| 5hsgA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 42.0 | 4.48e-01 | 86.1% | 99.2% |
| 1svvA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.50 | 45.0 | 3.82e-01 | 100.0% | 68.0% |
| 1x7fA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 45.0 | 3.84e-01 | 97.2% | 64.5% |
| 3nx3A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.50 | 45.0 | 3.82e-01 | 100.0% | 68.4% |
| 3a11B02 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.50 | 40.0 | 3.64e-01 | 85.4% | 88.8% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954289 | 2002.1.1.221 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF5131 | 0.96 | 66.0 | 5.35e-01 | 81.9% | 42.1% |
| 4933060 | 2002.1.1.221 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF5131 | 0.72 | 50.0 | 4.18e-01 | 73.6% | 44.3% |
| 5058311 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.58 | 42.0 | 4.06e-01 | 93.1% | 65.5% |
| 4999481 | 2002.1.1.8 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase | 0.58 | 50.0 | 4.00e-01 | 93.8% | 94.5% |
| 4945908 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.57 | 41.0 | 3.99e-01 | 93.1% | 65.5% |
| 3602450 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.56 | 49.0 | 3.87e-01 | 94.4% | 82.3% |
| 1885902 | 2002.1.1.104 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_2_C | 0.56 | 48.0 | 3.89e-01 | 94.4% | 77.1% |
| 3288451 | 2002.1.1.55 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_25 | 0.56 | 48.0 | 4.18e-01 | 95.1% | 76.4% |
| 3736166 | 2004.1.1.292 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AFG1_ATPase | 0.56 | 43.0 | 4.25e-01 | 95.8% | 76.7% |
| 4990956 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 50.0 | 3.91e-01 | 100.0% | 61.9% |
| 1152214 | 7577.1.1.8 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Beta_elim_lyase | 0.55 | 43.0 | 3.65e-01 | 80.6% | 61.7% |
| 3688301 | 2004.1.1.292 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AFG1_ATPase | 0.55 | 44.0 | 4.35e-01 | 96.5% | 78.7% |
| 5056018 | 2002.1.1.28 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRAI | 0.55 | 47.0 | 4.12e-01 | 97.2% | 61.5% |
| 4946054 | 2002.1.1.442 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Mob_synth_C | 0.55 | 50.0 | 3.94e-01 | 97.9% | 56.9% |
| 4936294 | 2007.1.3.73 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › DUF2325 | 0.55 | 41.0 | 4.65e-01 | 94.4% | 100.0% |
| 3605500 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.55 | 44.0 | 3.95e-01 | 86.8% | 84.8% |
| 4107914 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.54 | 49.0 | 4.06e-01 | 97.9% | 70.2% |
| 3276001 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.54 | 45.0 | 3.49e-01 | 90.3% | 96.3% |
| 3624406 | 2003.1.5.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NNMT_PNMT_TEMT | 0.54 | 41.0 | 3.32e-01 | 79.9% | 49.1% |
| 1290373 | 2002.1.1.55 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_25 | 0.53 | 47.0 | 4.17e-01 | 95.8% | 79.8% |
| 5077587 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 47.0 | 3.87e-01 | 96.5% | 68.8% |
| 4019331 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.53 | 43.0 | 3.80e-01 | 84.7% | 86.5% |
| 3186615 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.53 | 40.0 | 2.86e-01 | 79.9% | 41.8% |
| 5023378 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 46.0 | 3.89e-01 | 97.2% | 72.0% |
| 4378000 | 2002.1.1.290 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31264 | 0.52 | 46.0 | 4.15e-01 | 95.1% | 75.8% |
| 3175032 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 45.0 | 3.48e-01 | 93.1% | 54.0% |
| 3609546 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.52 | 42.0 | 3.59e-01 | 84.7% | 88.0% |
| 4989373 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 46.0 | 3.92e-01 | 97.9% | 76.7% |
| 3600291 | 2003.1.7.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like | 0.52 | 42.0 | 3.71e-01 | 85.4% | 88.3% |
| 3486710 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.52 | 41.0 | 3.51e-01 | 84.7% | 91.1% |
| 3240155 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.52 | 41.0 | 3.78e-01 | 84.7% | 91.1% |
| 4457810 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.51 | 46.0 | 3.76e-01 | 98.6% | 52.8% |
| 3639139 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.51 | 41.0 | 3.57e-01 | 84.7% | 90.6% |
| 3837704 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.51 | 41.0 | 3.67e-01 | 85.4% | 84.9% |
| 3991752 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.51 | 38.0 | 3.53e-01 | 77.1% | 82.8% |
| 3353265 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.51 | 41.0 | 3.55e-01 | 84.7% | 84.5% |
| 3519562 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.51 | 41.0 | 3.61e-01 | 84.7% | 85.7% |
| 4994838 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.51 | 40.0 | 3.73e-01 | 83.3% | 89.7% |
| 3701782 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.51 | 41.0 | 3.67e-01 | 85.4% | 87.3% |
| 4458555 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.51 | 41.0 | 3.45e-01 | 86.1% | 81.6% |
| 3968884 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.51 | 46.0 | 3.58e-01 | 100.0% | 51.9% |
| 5025202 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.50 | 40.0 | 3.74e-01 | 83.3% | 91.1% |
| 3728741 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.50 | 41.0 | 3.46e-01 | 85.4% | 88.3% |
| 3939480 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.50 | 41.0 | 3.48e-01 | 85.4% | 83.0% |
| 1150273 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.50 | 41.0 | 3.58e-01 | 86.1% | 89.6% |
| 3615317 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.50 | 41.0 | 3.53e-01 | 85.4% | 85.3% |
| 3576311 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.50 | 40.0 | 3.52e-01 | 84.7% | 88.8% |