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YP_010078101.1

Arc-Vir

NC_054954__YP_010078101.1__KMC42-gp71__00071

Identity

Accession:
NC_054954 ↗
Protein ID:
YP_010078101.1 ↗
Kingdom:
archaea

Quality

62.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vertoviridae› Myohalovirus› Natrialba_phage_PhiCh1

TaxID: 114777

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-113
PDB
Domain cluster: rep: IMGVR_UViG_3300002219_000010-3300002219-SCADCLC_1000083292__D4-110
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04266.21 best ASCH 26.3 1.40e-05 99.0% 96.1%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t62B00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.82 76.0 6.44e-01 100.0% 74.2%
3s9xA00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.80 74.0 6.33e-01 100.0% 78.0%
2dp9A01 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.79 63.0 6.49e-01 100.0% 89.0%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.77 52.0 5.91e-01 100.0% 91.1%
1r3eA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.77 50.0 5.49e-01 100.0% 81.0%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.77 46.0 5.41e-01 100.0% 84.0%
1xneA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.75 68.0 6.61e-01 100.0% 91.2%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.73 43.0 5.21e-01 100.0% 88.4%
2apoA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.73 48.0 4.92e-01 100.0% 69.7%
2kkuA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.73 66.0 6.02e-01 100.0% 79.1%
3zv0C01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.73 47.0 4.13e-01 100.0% 45.4%
1q7hA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.73 47.0 5.17e-01 100.0% 80.2%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.72 41.0 5.06e-01 100.0% 89.4%
3c0kA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.71 42.0 4.99e-01 100.0% 87.3%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.70 64.0 6.30e-01 100.0% 95.5%
2p38A02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.70 41.0 5.08e-01 100.0% 93.8%
2as0A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.69 41.0 4.93e-01 100.0% 88.6%
1sqwA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.69 46.0 5.06e-01 100.0% 84.3%
5zveA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 45.0 4.86e-01 100.0% 80.2%
1te7A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.68 59.0 5.96e-01 100.0% 95.1%
4dmgA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.67 40.0 4.66e-01 100.0% 84.7%
1iq8A04 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.67 44.0 4.96e-01 100.0% 88.5%
8a8gA01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.66 60.0 5.42e-01 100.0% 87.9%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.65 59.0 5.32e-01 100.0% 88.7%
3cr8A01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.55 49.0 4.38e-01 100.0% 70.9%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.54 42.0 4.40e-01 100.0% 89.5%
4bbyB04 3.30.70.3450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 33.0 3.30e-01 87.5% 60.6%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 46.0 4.51e-01 100.0% 91.5%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 4.12e-01 98.1% 76.9%
1nlrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 36.0 2.92e-01 73.1% 83.8%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 4.11e-01 98.1% 90.1%
1ucnA00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.51 36.0 3.27e-01 88.5% 51.0%
3mq2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 45.0 3.60e-01 100.0% 47.4%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 4.25e-01 100.0% 83.1%
3g5tA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 2.90e-01 85.6% 47.8%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990496 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.88 79.0 7.61e-01 100.0% 85.2%
5077279 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.88 79.0 7.44e-01 100.0% 81.7%
4972120 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.87 79.0 7.77e-01 100.0% 90.0%
4982523 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.87 78.0 7.57e-01 100.0% 86.1%
5042221 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.87 78.0 7.84e-01 100.0% 94.3%
4954540 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.86 79.0 7.73e-01 100.0% 90.9%
5022429 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.86 78.0 7.26e-01 100.0% 80.0%
5006048 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.86 74.0 7.24e-01 100.0% 85.5%
4972117 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.85 79.0 7.51e-01 100.0% 85.0%
5070577 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.85 80.0 7.83e-01 100.0% 93.6%
4608277 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.85 80.0 7.32e-01 100.0% 96.9%
4998591 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.84 78.0 6.92e-01 100.0% 82.8%
4054728 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.84 43.0 5.61e-01 100.0% 88.3%
4155252 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.83 75.0 7.49e-01 100.0% 93.3%
3165125 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.83 74.0 7.46e-01 100.0% 93.3%
4019865 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.83 78.0 6.88e-01 100.0% 80.0%
4165251 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.82 44.0 5.52e-01 100.0% 86.2%
4958692 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.82 76.0 6.63e-01 100.0% 82.0%
177 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.81 75.0 6.49e-01 100.0% 78.4%
5079450 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.80 69.0 6.20e-01 100.0% 67.9%
2105336 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.80 69.0 6.04e-01 100.0% 63.8%
3279326 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.80 65.0 6.95e-01 99.0% 98.9%
4995643 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.80 69.0 6.13e-01 100.0% 66.2%
4048693 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.80 44.0 5.31e-01 100.0% 81.4%
144031 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.80 74.0 6.33e-01 100.0% 78.0%
4582116 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.80 44.0 5.49e-01 100.0% 87.7%
3603398 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.80 75.0 7.37e-01 100.0% 99.1%
4953076 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.80 73.0 6.97e-01 100.0% 90.0%
4262578 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.80 43.0 5.40e-01 100.0% 86.2%
5016521 1.1.9.7 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.80 69.0 6.28e-01 100.0% 71.1%
5078127 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.79 60.0 6.59e-01 84.6% 96.5%
3944719 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.79 74.0 6.66e-01 100.0% 77.0%
4149342 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.79 47.0 5.64e-01 100.0% 88.6%
178 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.79 63.0 6.05e-01 100.0% 74.2%
4940231 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.79 67.0 6.11e-01 100.0% 70.7%
4558844 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.78 43.0 5.40e-01 100.0% 87.7%
3817355 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.78 72.0 6.65e-01 100.0% 79.2%
4122172 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.77 66.0 6.24e-01 100.0% 76.6%
4970789 1.1.9.7 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.77 70.0 6.28e-01 100.0% 72.9%
4632972 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.77 46.0 5.56e-01 100.0% 91.2%
162 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.77 50.0 5.70e-01 100.0% 88.3%
4229723 1.1.9.7 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.77 66.0 5.78e-01 100.0% 63.3%
192 1.1.9.13 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF2584 0.77 46.0 5.28e-01 100.0% 79.7%
4361032 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.76 45.0 5.35e-01 100.0% 87.1%
5023730 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.76 66.0 5.88e-01 99.0% 66.9%
5042356 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.75 43.0 5.22e-01 100.0% 85.7%
179 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.75 68.0 6.61e-01 100.0% 91.2%
4498362 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.74 48.0 5.03e-01 100.0% 71.6%
4312009 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 44.0 5.30e-01 100.0% 88.6%
4480273 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 42.0 5.18e-01 100.0% 90.8%
5024536 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 67.0 5.99e-01 100.0% 74.5%
4995416 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.73 44.0 5.14e-01 100.0% 84.0%
4996509 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.72 47.0 5.41e-01 99.0% 90.7%
186 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.72 41.0 5.00e-01 100.0% 86.8%
4945851 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 46.0 4.97e-01 100.0% 75.6%
4943383 1.1.9.53 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › Methyltr_RsmB-F 0.72 46.0 4.84e-01 100.0% 71.6%
3590925 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.71 42.0 5.11e-01 100.0% 93.8%
4013185 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 56.0 4.95e-01 100.0% 60.0%
5051591 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.69 45.0 5.07e-01 100.0% 86.3%
4943208 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 45.0 5.19e-01 100.0% 92.0%
4959440 1.1.9.16 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.69 64.0 5.35e-01 100.0% 76.5%
3208149 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 53.0 4.95e-01 100.0% 66.2%
5022982 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.68 45.0 5.19e-01 99.0% 93.3%
4956000 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.68 41.0 4.81e-01 100.0% 88.6%
4589682 1.1.9.16 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.68 63.0 5.36e-01 100.0% 80.6%
2391027 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 59.0 5.07e-01 100.0% 76.4%
5000162 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 55.0 5.54e-01 97.1% 100.0%
3945543 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 44.0 4.86e-01 100.0% 87.1%
3934702 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 56.0 5.01e-01 100.0% 71.4%
4647050 1.1.13.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.59 40.0 4.44e-01 100.0% 88.7%
4033372 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 42.0 4.14e-01 100.0% 74.5%
5074849 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 28.0 3.65e-01 78.8% 96.4%
3398695 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 44.0 3.62e-01 100.0% 69.2%
5046869 328.9.1.1 ↗ a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.50 31.0 3.49e-01 98.1% 81.2%
D2 high residues 146-187
PDB