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NC_054955.1__YP_010078127.1__KMC43_gp03__00003

Bact-Vir

NC_054955.1__YP_010078127.1__KMC43_gp03__00003

Identity

Accession:
NC_054955 ↗
Kingdom:
phage

Quality

95.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rahariannevirus› Ralstonia_phage_Raharianne

TaxID: 2759715

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-58
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hinA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.82 68.0 6.48e-01 92.7% 78.8%
3bd1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 69.0 6.59e-01 100.0% 87.7%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 62.0 5.62e-01 100.0% 86.8%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 62.0 5.50e-01 100.0% 72.0%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 63.0 6.15e-01 100.0% 95.0%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 61.0 5.84e-01 100.0% 87.9%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 60.0 5.30e-01 100.0% 78.6%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.76e-01 81.8% 96.6%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.11e-01 92.7% 70.5%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.55 39.0 3.34e-01 76.4% 66.3%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 4.38e-01 94.5% 85.1%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.79e-01 92.7% 67.8%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 4.31e-01 96.4% 87.5%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 3.98e-01 94.5% 77.6%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.87e-01 94.5% 75.3%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.52e-01 96.4% 91.1%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 46.0 4.16e-01 98.2% 84.0%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 46.0 3.96e-01 100.0% 72.4%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 46.0 4.05e-01 100.0% 70.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004322 101.1.4.24 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › YdaS_toxin 0.81 73.0 6.54e-01 100.0% 77.3%
2389360 101.1.4.24 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › YdaS_toxin 0.77 65.0 6.20e-01 98.2% 80.0%
3164312 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 64.0 5.68e-01 100.0% 71.2%
4933148 101.1.4.96 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PolC_DP2_central 0.71 59.0 5.07e-01 96.4% 61.1%
5028792 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.67 57.0 4.21e-01 96.4% 38.6%
3968752 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 46.0 3.83e-01 90.9% 60.0%
5023952 101.1.2.888 ↗ alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4_2 0.56 46.0 4.23e-01 96.4% 70.0%
3974739 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 3.89e-01 90.9% 66.7%
3279636 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.55 45.0 3.91e-01 92.7% 67.8%
3972270 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.55 48.0 4.43e-01 94.5% 80.0%
3968471 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.55 46.0 3.93e-01 92.7% 73.3%
3969657 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.54 47.0 4.22e-01 94.5% 74.7%
3943559 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 47.0 3.98e-01 96.4% 74.4%
3968864 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.54 46.0 4.07e-01 96.4% 66.7%
3941586 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 46.0 4.06e-01 94.5% 82.5%
4588620 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.54 45.0 3.82e-01 92.7% 62.2%
3945660 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.53 47.0 4.02e-01 96.4% 78.8%
3283527 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.53 47.0 4.10e-01 96.4% 78.8%
3283604 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.53 46.0 3.74e-01 94.5% 72.0%
3286796 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.53 45.0 3.79e-01 94.5% 76.8%
3962431 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.53 47.0 4.19e-01 96.4% 76.0%
3961692 101.1.1.300 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.53 46.0 3.85e-01 96.4% 74.7%
4282037 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.53 46.0 3.85e-01 94.5% 80.0%
3290024 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.53 45.0 3.96e-01 96.4% 63.7%
4642479 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.53 47.0 3.87e-01 96.4% 76.8%
3946198 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.53 46.0 3.99e-01 98.2% 83.5%
4046680 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.52 46.0 3.73e-01 96.4% 72.0%
3959738 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 45.0 3.76e-01 96.4% 70.5%
3975610 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.52 44.0 4.09e-01 100.0% 72.9%
3955106 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.52 47.0 3.97e-01 100.0% 77.8%
3968151 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.52 46.0 3.92e-01 96.4% 74.1%
5070991 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.52 44.0 4.08e-01 94.5% 77.1%
3958970 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.52 46.0 4.08e-01 100.0% 81.2%
3942639 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.52 46.0 3.90e-01 100.0% 78.9%
3982095 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.51 45.0 3.70e-01 98.2% 73.5%