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NC_054955.1__YP_010078150.1__KMC43_gp26__00026
Bact-VirNC_054955.1__YP_010078150.1__KMC43_gp26__00026
Identity
- Accession:
- NC_054955 ↗
- Kingdom:
- phage
Quality
83.3
mean pLDDT
Taxonomy
TaxID: 2759715
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-137
Domain cluster:
rep: NC_070829.1__YP_010655501.1__PP630_gp010__00010__D102-187
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06810.18 best | Phage_scaffold | 36.3 | 7.90e-09 | 100.0% | 58.8% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zvuA03 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.60 | 46.0 | 4.16e-01 | 82.2% | 61.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4972215 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.82 | 58.0 | 4.54e-01 | 90.7% | 37.1% |
| 4019360 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.70 | 50.0 | 4.32e-01 | 73.8% | 55.6% |
| 3499672 | 1203.1.2.13 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › Ribophorin_II | 0.63 | 44.0 | 3.86e-01 | 70.1% | 78.0% |
| 3484488 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 54.0 | 3.90e-01 | 92.5% | 67.4% |
| 3670391 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.62 | 47.0 | 3.36e-01 | 80.4% | 31.3% |
| 5035483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 51.0 | 4.36e-01 | 100.0% | 60.6% |
| 3677363 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.57 | 40.0 | 2.86e-01 | 72.0% | 84.4% |
| 4024325 | 4984.1.1.2 ↗ | alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › DBL_C | 0.51 | 38.0 | 3.17e-01 | 80.4% | 46.1% |
| 3517171 | 604.8.1.3 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Gpi1 | 0.50 | 37.0 | 2.94e-01 | 85.0% | 38.6% |