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NC_054955.1__YP_010078164.1__KMC43_gp40__00040

Bact-Vir

NC_054955.1__YP_010078164.1__KMC43_gp40__00040

Identity

Accession:
NC_054955 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-82
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lqxA00 6.10.250.1700 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 47.0 4.86e-01 75.6% 90.2%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.21e-01 82.2% 70.1%
5ywwA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.60 47.0 3.71e-01 100.0% 38.3%
1khvA05 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.60 48.0 3.95e-01 100.0% 46.4%
4bkxA01 4.10.1240.50 Few Secondary Structures › Irregular › Hormone receptor fold › 0.60 41.0 3.13e-01 73.3% 42.5%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 34.0 3.09e-01 80.0% 40.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3340385 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.76 58.0 4.01e-01 82.2% 25.5%
3461922 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.75 51.0 3.24e-01 80.0% 14.0%
3462474 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.72 53.0 3.75e-01 80.0% 25.7%